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The map label for this gene is yhdW [H]

Identifier: 125622955

GI number: 125622955

Start: 71885

End: 72739

Strand: Reverse

Name: yhdW [H]

Synonym: llmg_0076

Alternate gene names: 125622955

Gene position: 72739-71885 (Counterclockwise)

Preceding gene: 125622956

Following gene: 125622954

Centisome position: 2.88

GC content: 33.92

Gene sequence:

>855_bases
ATGAATTTCTTATCCAGTGTATTCAATAAAATACTTACTCAACTTGATAAAAAAAGAGTAAATAAATTCAAAACTGAGCA
AGCTCTCAAGCCAAACTTGAATTCAAAAACCTTAGTTTTTGCGCATCGTGGTTCAAAATCTAATAATCCAGAAAATACAC
TTGCTGCCTTTCGTGAAGCCATCCGCGTTCAATCTGATGGAATCGAGTTAGACGTCCATTTATCGCTTGATAATGAATTA
ATCATCATCCACGACGAAAAAATTGACCGGACAACAAACGGCAAAGGCTTAGTTAGAAAAATGACTTCTGCTAATATACA
AAAATTTGATGCTGGCTCTTGGTATCATCCTAATTTTGCTGACGAAAAAATTCCTCGCCTCTCAGAAGTATTAAAATTAC
TGACAGATTTATCCTTTAGCGGTTATTTAAATATTGAAATTAAAACCGATAAATTTAACTATCCTGGAATTGAAAAAAAA
TTATCTGAATTAATGACAGAGAGTAAATGGCCTTTTATTTATATTTATAGCTCCTTTAATTTGCAGTCCTTAAAAAGAAT
TCACGAACTTGAGCCTAAGATTGAAATAAATTATTTAACAAAAAATATTTTACACTTAAAAAAACGCCAAGAGGGCATAT
TGACCGACTTTATCACCGGAATTCATCCCCGCAGAAATTACGCACTCAAGCACCCACTTCTTCTAAAAGCTTCTAATAGA
CCCTTTCGCCTCTGGACCGTTAATCAAGAGTCTGAAATGCGCAAAGCTTTTCAACAAAATGTAGCTGGAATCATTACCGA
TTATCCTGAACAAGCCTTAAAAATTCGTCAACAAATTCAAGAGCAGCCAAAATAG

Upstream 100 bases:

>100_bases
ATATGAAGAATCTCATTTATAAATTTACTGACAAGTTTGTCAGAGGATTTTTTGAATCTTCGTCATCAAAATTAATTCAA
AAATTGAAAGGCAATATCTG

Downstream 100 bases:

>100_bases
GCTGCTTTTTCGTCCATAAATGATATCTACTTCACAAAATTTTGAAGATAAAATCACATAGTGTAGCAATTGTAAGCGTA
AAGCATTTTTCTTTACATTT

Product: glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MNFLSSVFNKILTQLDKKRVNKFKTEQALKPNLNSKTLVFAHRGSKSNNPENTLAAFREAIRVQSDGIELDVHLSLDNEL
IIIHDEKIDRTTNGKGLVRKMTSANIQKFDAGSWYHPNFADEKIPRLSEVLKLLTDLSFSGYLNIEIKTDKFNYPGIEKK
LSELMTESKWPFIYIYSSFNLQSLKRIHELEPKIEINYLTKNILHLKKRQEGILTDFITGIHPRRNYALKHPLLLKASNR
PFRLWTVNQESEMRKAFQQNVAGIITDYPEQALKIRQQIQEQPK

Sequences:

>Translated_284_residues
MNFLSSVFNKILTQLDKKRVNKFKTEQALKPNLNSKTLVFAHRGSKSNNPENTLAAFREAIRVQSDGIELDVHLSLDNEL
IIIHDEKIDRTTNGKGLVRKMTSANIQKFDAGSWYHPNFADEKIPRLSEVLKLLTDLSFSGYLNIEIKTDKFNYPGIEKK
LSELMTESKWPFIYIYSSFNLQSLKRIHELEPKIEINYLTKNILHLKKRQEGILTDFITGIHPRRNYALKHPLLLKASNR
PFRLWTVNQESEMRKAFQQNVAGIITDYPEQALKIRQQIQEQPK
>Mature_284_residues
MNFLSSVFNKILTQLDKKRVNKFKTEQALKPNLNSKTLVFAHRGSKSNNPENTLAAFREAIRVQSDGIELDVHLSLDNEL
IIIHDEKIDRTTNGKGLVRKMTSANIQKFDAGSWYHPNFADEKIPRLSEVLKLLTDLSFSGYLNIEIKTDKFNYPGIEKK
LSELMTESKWPFIYIYSSFNLQSLKRIHELEPKIEINYLTKNILHLKKRQEGILTDFITGIHPRRNYALKHPLLLKASNR
PFRLWTVNQESEMRKAFQQNVAGIITDYPEQALKIRQQIQEQPK

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=114, Percent_Identity=36.8421052631579, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI260763876, Length=274, Percent_Identity=25.1824817518248, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI260763880, Length=190, Percent_Identity=26.8421052631579, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI260763878, Length=190, Percent_Identity=27.8947368421053, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1789858, Length=158, Percent_Identity=31.6455696202532, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 33065; Mature: 33065

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFLSSVFNKILTQLDKKRVNKFKTEQALKPNLNSKTLVFAHRGSKSNNPENTLAAFREA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
IRVQSDGIELDVHLSLDNELIIIHDEKIDRTTNGKGLVRKMTSANIQKFDAGSWYHPNFA
HHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCC
DEKIPRLSEVLKLLTDLSFSGYLNIEIKTDKFNYPGIEKKLSELMTESKWPFIYIYSSFN
HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
LQSLKRIHELEPKIEINYLTKNILHLKKRQEGILTDFITGIHPRRNYALKHPLLLKASNR
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCC
PFRLWTVNQESEMRKAFQQNVAGIITDYPEQALKIRQQIQEQPK
CEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNFLSSVFNKILTQLDKKRVNKFKTEQALKPNLNSKTLVFAHRGSKSNNPENTLAAFREA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
IRVQSDGIELDVHLSLDNELIIIHDEKIDRTTNGKGLVRKMTSANIQKFDAGSWYHPNFA
HHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCC
DEKIPRLSEVLKLLTDLSFSGYLNIEIKTDKFNYPGIEKKLSELMTESKWPFIYIYSSFN
HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
LQSLKRIHELEPKIEINYLTKNILHLKKRQEGILTDFITGIHPRRNYALKHPLLLKASNR
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCC
PFRLWTVNQESEMRKAFQQNVAGIITDYPEQALKIRQQIQEQPK
CEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]