| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
Click here to switch to the map view.
The map label for this gene is 124486472
Identifier: 124486472
GI number: 124486472
Start: 1694222
End: 1694827
Strand: Reverse
Name: 124486472
Synonym: Mlab_1660
Alternate gene names: NA
Gene position: 1694827-1694222 (Counterclockwise)
Preceding gene: 124486473
Following gene: 124486467
Centisome position: 93.9
GC content: 51.98
Gene sequence:
>606_bases ATGAATTCGAATAATGTGCCAAACGGGCAGTTCATGTCGTATGAACGTGAGCCGGCAAAGCGCGTTTTCGCCGCTGAACT GCGCGAGGCTACAAAGACCATCAAGGATACCGAGGATGAAAAGAGTCCGGTGTATCTTTTGCTGCCGACAGGTGAGCGGT GTAACCGTGTTCTGATCGCCGGGACGATAACGCAGAAGGACAAGGTCGGTGATCAGAATATTTTGTACCGTGCGCGTGTT TCCGATCCGACCGGGATATTCTATATCAACGCGAGTTCGTATCAGCCTGAGGCGATGCATCAGCTTGCTAAGATCGATAC GGCGAATCCGTCGTTCGTGGTGGTTGTCGGGAAGCCGAATGCCTACACGAATCCTGAGGGTAAAACCCTGATTTCCGTGC GTGCCGAGTCGATTCTCGTCGTTAATCAGGAGATCCGCGATCTCTGGGTCCAGGATGCGGCACGATCTACCCTTGATAGA ATGGATGCGCTTTTGTCGGATTCTCCGTCTGCGGATGTTCTTCTCGCGCGTGAGACATATCATTTTTCGCCGGAGCACTG GAAAAAGATGGTTTTTGATGCTCTTTCGCGGATCATGCAGCTGTGA
Upstream 100 bases:
>100_bases GCAGGATTCTGGTGAAGTCTGCGGAGTTCATTCATCTCGATCCGACAGTCACTGCCGAACTTATGAATCGGGCCGGGGCT GCTGCAGGAGGTAACAACGT
Downstream 100 bases:
>100_bases TTCCCATCAATCCTTTCTTTTTTGAAACATCATTCCGTTTGGTTTATATGCCTGATTGGCTAACATTATTACCTCACAAG TCAACTGATCTCTGAGCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MNSNNVPNGQFMSYEREPAKRVFAAELREATKTIKDTEDEKSPVYLLLPTGERCNRVLIAGTITQKDKVGDQNILYRARV SDPTGIFYINASSYQPEAMHQLAKIDTANPSFVVVVGKPNAYTNPEGKTLISVRAESILVVNQEIRDLWVQDAARSTLDR MDALLSDSPSADVLLARETYHFSPEHWKKMVFDALSRIMQL
Sequences:
>Translated_201_residues MNSNNVPNGQFMSYEREPAKRVFAAELREATKTIKDTEDEKSPVYLLLPTGERCNRVLIAGTITQKDKVGDQNILYRARV SDPTGIFYINASSYQPEAMHQLAKIDTANPSFVVVVGKPNAYTNPEGKTLISVRAESILVVNQEIRDLWVQDAARSTLDR MDALLSDSPSADVLLARETYHFSPEHWKKMVFDALSRIMQL >Mature_201_residues MNSNNVPNGQFMSYEREPAKRVFAAELREATKTIKDTEDEKSPVYLLLPTGERCNRVLIAGTITQKDKVGDQNILYRARV SDPTGIFYINASSYQPEAMHQLAKIDTANPSFVVVVGKPNAYTNPEGKTLISVRAESILVVNQEIRDLWVQDAARSTLDR MDALLSDSPSADVLLARETYHFSPEHWKKMVFDALSRIMQL
Specific function: Unknown
COG id: COG3390
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22634; Mature: 22634
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSNNVPNGQFMSYEREPAKRVFAAELREATKTIKDTEDEKSPVYLLLPTGERCNRVLIA CCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEE GTITQKDKVGDQNILYRARVSDPTGIFYINASSYQPEAMHQLAKIDTANPSFVVVVGKPN EEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCC AYTNPEGKTLISVRAESILVVNQEIRDLWVQDAARSTLDRMDALLSDSPSADVLLARETY CCCCCCCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC HFSPEHWKKMVFDALSRIMQL CCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNSNNVPNGQFMSYEREPAKRVFAAELREATKTIKDTEDEKSPVYLLLPTGERCNRVLIA CCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEE GTITQKDKVGDQNILYRARVSDPTGIFYINASSYQPEAMHQLAKIDTANPSFVVVVGKPN EEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCC AYTNPEGKTLISVRAESILVVNQEIRDLWVQDAARSTLDRMDALLSDSPSADVLLARETY CCCCCCCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC HFSPEHWKKMVFDALSRIMQL CCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA