| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486403
Identifier: 124486403
GI number: 124486403
Start: 1620107
End: 1620901
Strand: Reverse
Name: 124486403
Synonym: Mlab_1589
Alternate gene names: NA
Gene position: 1620901-1620107 (Counterclockwise)
Preceding gene: 124486404
Following gene: 124486402
Centisome position: 89.8
GC content: 53.33
Gene sequence:
>795_bases ATGTACATGGATGACGTCTGTCCCGCCCCGGTGAAGGAACGGTACTGGGAAATCGATGCGATACGCGGTTTTTCGCTTCT GGCGATGATTGCATTCCACACCGTCTTTCTCCTGGGCGTTTTCCACATCATCAATGTGGATGTCTGGCTTGGACTTGGGG TCTATCTGCCGCTTGGGACAAGCGTTTTCGTTATAATATCCGGGACCTCCCTGATCCTTCGCCACGGCCGGATGCTCGAT AAACCGCGCCGGGCCTATTATATGGCTATACTGAAACGCGGGATAGAGATCATGCTGATCGGGCTTGGGGTCTCCGTTAT TGCGTCCCTTTTGATTCTGGTGTTCATCAACGACGGAAGATATGTGTACTTCAACTTCCTGCAGATGATGGGTCTCTCCA TGATCCTGTGCATCCCGTTTTTACGATTCGGGAAATGGAGCCTGATCCCTGCGGTATCGTTCATCCTGCTCGGTCTCTTT CTCGAAACGATCAAAGGACCCGCCTTGCTGATGGTTTTCGGGATCCTGCCGCCGGATTTCTATCCGCGTGACTTCTTCCC CGTTTTTCCCTGGGTCGGCGTTATGCTGCTTGGCGTTTTCCTCGGCTCTCTTCTGTATCCAAACGGGATCCGCAGGTTCA ATCTCCCCTCGGCGGGTAAGATCGGCCAGAGTCTTGCACTTATCGGCAGGTATCCTCTCGAGATATATCTGGCCCATATC CCGGTGATTGGGTCCGTCATTCTCGTGATCGTCGTAGTTTCCGGGATGCTCGGTTGTCCCATCGGGCATCTCTGA
Upstream 100 bases:
>100_bases TTCGGACTCGTGAGCGAACTCGCGAAGAAGGTGTACTGATGACTGCTTGTGGGTGTGTCGTAACAATACTGAACATCTTT ACCTCGCCGGCCCAATACTA
Downstream 100 bases:
>100_bases CTTTTTCTAAGGAACTTACTTATCTGCTTAACACCTACATGCCTGAAACAATGAGCGACGAACAGAGCATATCTCCGGGA TCTCCCCCTTTAGTAAAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MYMDDVCPAPVKERYWEIDAIRGFSLLAMIAFHTVFLLGVFHIINVDVWLGLGVYLPLGTSVFVIISGTSLILRHGRMLD KPRRAYYMAILKRGIEIMLIGLGVSVIASLLILVFINDGRYVYFNFLQMMGLSMILCIPFLRFGKWSLIPAVSFILLGLF LETIKGPALLMVFGILPPDFYPRDFFPVFPWVGVMLLGVFLGSLLYPNGIRRFNLPSAGKIGQSLALIGRYPLEIYLAHI PVIGSVILVIVVVSGMLGCPIGHL
Sequences:
>Translated_264_residues MYMDDVCPAPVKERYWEIDAIRGFSLLAMIAFHTVFLLGVFHIINVDVWLGLGVYLPLGTSVFVIISGTSLILRHGRMLD KPRRAYYMAILKRGIEIMLIGLGVSVIASLLILVFINDGRYVYFNFLQMMGLSMILCIPFLRFGKWSLIPAVSFILLGLF LETIKGPALLMVFGILPPDFYPRDFFPVFPWVGVMLLGVFLGSLLYPNGIRRFNLPSAGKIGQSLALIGRYPLEIYLAHI PVIGSVILVIVVVSGMLGCPIGHL >Mature_264_residues MYMDDVCPAPVKERYWEIDAIRGFSLLAMIAFHTVFLLGVFHIINVDVWLGLGVYLPLGTSVFVIISGTSLILRHGRMLD KPRRAYYMAILKRGIEIMLIGLGVSVIASLLILVFINDGRYVYFNFLQMMGLSMILCIPFLRFGKWSLIPAVSFILLGLF LETIKGPALLMVFGILPPDFYPRDFFPVFPWVGVMLLGVFLGSLLYPNGIRRFNLPSAGKIGQSLALIGRYPLEIYLAHI PVIGSVILVIVVVSGMLGCPIGHL
Specific function: Unknown
COG id: COG3503
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29410; Mature: 29410
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYMDDVCPAPVKERYWEIDAIRGFSLLAMIAFHTVFLLGVFHIINVDVWLGLGVYLPLGT CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SVFVIISGTSLILRHGRMLDKPRRAYYMAILKRGIEIMLIGLGVSVIASLLILVFINDGR EEEEEEECHHHHHHCCHHCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHEECCCC YVYFNFLQMMGLSMILCIPFLRFGKWSLIPAVSFILLGLFLETIKGPALLMVFGILPPDF CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC YPRDFFPVFPWVGVMLLGVFLGSLLYPNGIRRFNLPSAGKIGQSLALIGRYPLEIYLAHI CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH PVIGSVILVIVVVSGMLGCPIGHL HHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MYMDDVCPAPVKERYWEIDAIRGFSLLAMIAFHTVFLLGVFHIINVDVWLGLGVYLPLGT CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SVFVIISGTSLILRHGRMLDKPRRAYYMAILKRGIEIMLIGLGVSVIASLLILVFINDGR EEEEEEECHHHHHHCCHHCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHEECCCC YVYFNFLQMMGLSMILCIPFLRFGKWSLIPAVSFILLGLFLETIKGPALLMVFGILPPDF CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC YPRDFFPVFPWVGVMLLGVFLGSLLYPNGIRRFNLPSAGKIGQSLALIGRYPLEIYLAHI CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH PVIGSVILVIVVVSGMLGCPIGHL HHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA