Click here to switch to the map view.

The map label for this gene is yjjU [H]

Identifier: 124486227

GI number: 124486227

Start: 1441159

End: 1441971

Strand: Reverse

Name: yjjU [H]

Synonym: Mlab_1410

Alternate gene names: 124486227

Gene position: 1441971-1441159 (Counterclockwise)

Preceding gene: 124486229

Following gene: 124486226

Centisome position: 79.89

GC content: 47.48

Gene sequence:

>813_bases
ATGCGCGGCGCCTATACGGCCGGGGTCATCGATGCGCTGATCGATAATAAACTGGAATTCAGCTCATGCTATGGTGTTTC
ATCCGGTGCCTGTCATTGTGCGAGCTATCTCTCCAAACAGCACGGGAGAGCCTACCGGACCATGACCGACTATATCGACG
ATAAACGATACTTCAGTTACTGGAATCTGCTTACCAAAGGAGATCTTATCGGTCCGGAAATGCTCTATCATACGATTCCT
GAAGAGCTTGACCCGTTCGATTACGATGAATACAACAGATATCCGGGAAAATTTTTCAGCGTGGTGACAAACTGCGAAAC
GGGAGAGGCAGAGTATCTCCAGGTAAAGATCATGCAGGAGGATGTGGAGATGATTCATGCATCCAGCTCCCTCCCGATCC
TTGCGAAAAAAGTCAAAGTCGGCGAGAACTATTACTTCGACGGTGGGATATCCGATTCAATTCCCATCGAACGCTCCATT
GCCGACGGCAATACGAAAAACGTTCTCGTTCTGACACAGGCTGCAGGTTATCAAAAAAAGCCGGATAAAACCGTGCCTGT
TTTGAGAATTGCCTACGCCAAGTATCCGAAGATGGTCGATATGGTTGCGACCCGCCATATCCGGTATAATGAAGCATTGA
AAGTTGTAGACAGGGAAGAAAAAGCCGGCAGAGCATTTATTATTCGTCCACAAAAGCCGGTCGAGGTCTCCAGAATGGAC
TTCAACATGAAGAGAATCGCTCCATTCTATGAAGAAGGGTATCAGGAGACAGTGGACGTAATTGATGATCTGATCGCATT
TCTGGAGAAGTGA

Upstream 100 bases:

>100_bases
ATTGCCTGCGGCTCTGATTTCTGCGGAAAATATACAATTCATCAGAGAGCAAACTACTAACCACATGTATTCTGCTGGTT
TGATCTTCGAAGGGGGCGGG

Downstream 100 bases:

>100_bases
GGCTTCATCCAATGTATTCTGCAGGCTTGATTTTCGAAGGGGGCGGAATGCGCGGCGCCTATACGACAGGGGTTATCGAT
GCATTTCTGGATAATGATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRGAYTAGVIDALIDNKLEFSSCYGVSSGACHCASYLSKQHGRAYRTMTDYIDDKRYFSYWNLLTKGDLIGPEMLYHTIP
EELDPFDYDEYNRYPGKFFSVVTNCETGEAEYLQVKIMQEDVEMIHASSSLPILAKKVKVGENYYFDGGISDSIPIERSI
ADGNTKNVLVLTQAAGYQKKPDKTVPVLRIAYAKYPKMVDMVATRHIRYNEALKVVDREEKAGRAFIIRPQKPVEVSRMD
FNMKRIAPFYEEGYQETVDVIDDLIAFLEK

Sequences:

>Translated_270_residues
MRGAYTAGVIDALIDNKLEFSSCYGVSSGACHCASYLSKQHGRAYRTMTDYIDDKRYFSYWNLLTKGDLIGPEMLYHTIP
EELDPFDYDEYNRYPGKFFSVVTNCETGEAEYLQVKIMQEDVEMIHASSSLPILAKKVKVGENYYFDGGISDSIPIERSI
ADGNTKNVLVLTQAAGYQKKPDKTVPVLRIAYAKYPKMVDMVATRHIRYNEALKVVDREEKAGRAFIIRPQKPVEVSRMD
FNMKRIAPFYEEGYQETVDVIDDLIAFLEK
>Mature_270_residues
MRGAYTAGVIDALIDNKLEFSSCYGVSSGACHCASYLSKQHGRAYRTMTDYIDDKRYFSYWNLLTKGDLIGPEMLYHTIP
EELDPFDYDEYNRYPGKFFSVVTNCETGEAEYLQVKIMQEDVEMIHASSSLPILAKKVKVGENYYFDGGISDSIPIERSI
ADGNTKNVLVLTQAAGYQKKPDKTVPVLRIAYAKYPKMVDMVATRHIRYNEALKVVDREEKAGRAFIIRPQKPVEVSRMD
FNMKRIAPFYEEGYQETVDVIDDLIAFLEK

Specific function: Probable lipid hydrolase [H]

COG id: COG4667

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Escherichia coli, GI1790837, Length=239, Percent_Identity=24.2677824267782, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 30852; Mature: 30852

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGAYTAGVIDALIDNKLEFSSCYGVSSGACHCASYLSKQHGRAYRTMTDYIDDKRYFSY
CCCCHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
WNLLTKGDLIGPEMLYHTIPEELDPFDYDEYNRYPGKFFSVVTNCETGEAEYLQVKIMQE
HHHHHCCCCCCHHHHHHHCHHHCCCCCCHHHCCCCCHHHHHHHCCCCCCCEEEEEEEEHH
DVEMIHASSSLPILAKKVKVGENYYFDGGISDSIPIERSIADGNTKNVLVLTQAAGYQKK
HHHHHHCCCCCCHHHHEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
PDKTVPVLRIAYAKYPKMVDMVATRHIRYNEALKVVDREEKAGRAFIIRPQKPVEVSRMD
CCCCCCHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCC
FNMKRIAPFYEEGYQETVDVIDDLIAFLEK
CCHHHHCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRGAYTAGVIDALIDNKLEFSSCYGVSSGACHCASYLSKQHGRAYRTMTDYIDDKRYFSY
CCCCHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHH
WNLLTKGDLIGPEMLYHTIPEELDPFDYDEYNRYPGKFFSVVTNCETGEAEYLQVKIMQE
HHHHHCCCCCCHHHHHHHCHHHCCCCCCHHHCCCCCHHHHHHHCCCCCCCEEEEEEEEHH
DVEMIHASSSLPILAKKVKVGENYYFDGGISDSIPIERSIADGNTKNVLVLTQAAGYQKK
HHHHHHCCCCCCHHHHEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
PDKTVPVLRIAYAKYPKMVDMVATRHIRYNEALKVVDREEKAGRAFIIRPQKPVEVSRMD
CCCCCCHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCC
FNMKRIAPFYEEGYQETVDVIDDLIAFLEK
CCHHHHCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]