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The map label for this gene is ydiS [C]

Identifier: 124486209

GI number: 124486209

Start: 1421741

End: 1422889

Strand: Reverse

Name: ydiS [C]

Synonym: Mlab_1392

Alternate gene names: 124486209

Gene position: 1422889-1421741 (Counterclockwise)

Preceding gene: 124486210

Following gene: 124486208

Centisome position: 78.83

GC content: 51.52

Gene sequence:

>1149_bases
GTGTCTGATGTCATCGTCATAGGAGGGGGACCAGCCGGATCGACCGCCGCTCGAATCTGCGCCAAAGCAGGTCTTTCCAC
CAGGATTCTTGAAGAGCATGCCTCAATAGGGTATCCTGTCCAGTGTGCCGGTCTTCTTTCGAATAATGCCTTTGCCGAAT
GCGAAGTTTCGGACAGGTCCGTGTATAATACGGTCCGCGGAGCAAAAATCTGCGGCTCAGAGGGCCATTCTCTTTCTTTC
GATGCAAAAACGACAAAAGCCTATGTTGTCGACAGAGGCAGACTCGATCATGAAATTGCCGTTCGTGCGGCTGAGGCCGG
TGCTGAATTTTCTCTCAAGACCTGCGTGACAAAGCTCAATCCGGAGAAAAAAATTATTCATACTGCCGGCGGGGAGGAAA
TACCCTATACAATTTTGATCGCAGCAGATGGTCCGCGGAGTGTTGCCGCCCGGAGTCTTGGGATCCCGCCGTCATCCTAT
ATTTATTCCGGGATCCAGGCCGAAGTTCCGTGGGATGGAGATTCATCGCTTGTCGAGCTTCATCCAAATGCCGCTCCCGA
TTTTTTTGCCTGGGTCATTCCCTTGTCTGAAAAAAGAGCACGGGTGGGTCTTTGCGGAATGAAAAATGTACCTGATCTTT
TTGCTGAATTCCTCGCACGTTTTCCAGGGAGCGTCCTTCACTCGGTAACGGGTACGATTCCACTTGGGATCCGGCGTAAA
ACGTTTGGGTCGGGCTGCATGCTTGTCGGCGATGCCGCAGGTTTTCCAAAACCGACATCCGGCGGCGGAGTCTATACCGG
GATCCGCTCTGCCCGGTTTGCTGCGGAGATCGCCGTTAAATCTGCGGAAACCGGAGATACGACGGATGCATTTCTTTCTG
GGTATGAAGCTCTCTGGCGCGAAGATTTCGGTCGTGAACTGGATATGGGTCTAAAGGCTCTCGAGTTCCGCCGGAATCTG
AAGTCGGAAGATATCGATTCGATGATCGATGCAATGAATACTCCAGAGATACTTGATCTGATCGTTCGTTACGGGGATAT
GGACCGGCCTTCCGATCTGCTGAAGCGGCTTATGATGAAGCCATCTTTGTATGGAACATTCGGAAAGGTCGGTGTCAAAG
GAATTTTTAGATCGGTGTTCGGACAATAG

Upstream 100 bases:

>100_bases
ACGATGAAGCGAAGAAACGCGGGATTTGAGATTCAGTTTACCAAAATCTCAGTTGGAACCCCCACTTATTTTTATTTTTG
TATGACCAACAGAATCATAC

Downstream 100 bases:

>100_bases
ATTTCTGGACTTCCTATCTGAAGTTTGCAATTTCCGGCAGGCAATTCTTGATTTTTCCCCTCTCTTCCGTACTACCAATG
CTACCATCTTTATGTCCTCA

Product: excinuclease ABC subunit C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSDVIVIGGGPAGSTAARICAKAGLSTRILEEHASIGYPVQCAGLLSNNAFAECEVSDRSVYNTVRGAKICGSEGHSLSF
DAKTTKAYVVDRGRLDHEIAVRAAEAGAEFSLKTCVTKLNPEKKIIHTAGGEEIPYTILIAADGPRSVAARSLGIPPSSY
IYSGIQAEVPWDGDSSLVELHPNAAPDFFAWVIPLSEKRARVGLCGMKNVPDLFAEFLARFPGSVLHSVTGTIPLGIRRK
TFGSGCMLVGDAAGFPKPTSGGGVYTGIRSARFAAEIAVKSAETGDTTDAFLSGYEALWREDFGRELDMGLKALEFRRNL
KSEDIDSMIDAMNTPEILDLIVRYGDMDRPSDLLKRLMMKPSLYGTFGKVGVKGIFRSVFGQ

Sequences:

>Translated_382_residues
MSDVIVIGGGPAGSTAARICAKAGLSTRILEEHASIGYPVQCAGLLSNNAFAECEVSDRSVYNTVRGAKICGSEGHSLSF
DAKTTKAYVVDRGRLDHEIAVRAAEAGAEFSLKTCVTKLNPEKKIIHTAGGEEIPYTILIAADGPRSVAARSLGIPPSSY
IYSGIQAEVPWDGDSSLVELHPNAAPDFFAWVIPLSEKRARVGLCGMKNVPDLFAEFLARFPGSVLHSVTGTIPLGIRRK
TFGSGCMLVGDAAGFPKPTSGGGVYTGIRSARFAAEIAVKSAETGDTTDAFLSGYEALWREDFGRELDMGLKALEFRRNL
KSEDIDSMIDAMNTPEILDLIVRYGDMDRPSDLLKRLMMKPSLYGTFGKVGVKGIFRSVFGQ
>Mature_381_residues
SDVIVIGGGPAGSTAARICAKAGLSTRILEEHASIGYPVQCAGLLSNNAFAECEVSDRSVYNTVRGAKICGSEGHSLSFD
AKTTKAYVVDRGRLDHEIAVRAAEAGAEFSLKTCVTKLNPEKKIIHTAGGEEIPYTILIAADGPRSVAARSLGIPPSSYI
YSGIQAEVPWDGDSSLVELHPNAAPDFFAWVIPLSEKRARVGLCGMKNVPDLFAEFLARFPGSVLHSVTGTIPLGIRRKT
FGSGCMLVGDAAGFPKPTSGGGVYTGIRSARFAAEIAVKSAETGDTTDAFLSGYEALWREDFGRELDMGLKALEFRRNLK
SEDIDSMIDAMNTPEILDLIVRYGDMDRPSDLLKRLMMKPSLYGTFGKVGVKGIFRSVFGQ

Specific function: Probably Accepts Electrons From Ydiq/Ydir And Reduces A Quinone. [C]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. ChlP subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011777
- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.5.5.- [C]

Molecular weight: Translated: 40882; Mature: 40751

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVIVIGGGPAGSTAARICAKAGLSTRILEEHASIGYPVQCAGLLSNNAFAECEVSDRS
CCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCCHH
VYNTVRGAKICGSEGHSLSFDAKTTKAYVVDRGRLDHEIAVRAAEAGAEFSLKTCVTKLN
HHHHHCCCCEECCCCCEEEECCCCCEEEEEECCCCCHHHHEEEHHCCCCHHHHHHHHHCC
PEKKIIHTAGGEEIPYTILIAADGPRSVAARSLGIPPSSYIYSGIQAEVPWDGDSSLVEL
CCCEEEECCCCCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHCCEEEECCCCCCCCEEEE
HPNAAPDFFAWVIPLSEKRARVGLCGMKNVPDLFAEFLARFPGSVLHSVTGTIPLGIRRK
CCCCCCCCEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCEEEC
TFGSGCMLVGDAAGFPKPTSGGGVYTGIRSARFAAEIAVKSAETGDTTDAFLSGYEALWR
CCCCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
EDFGRELDMGLKALEFRRNLKSEDIDSMIDAMNTPEILDLIVRYGDMDRPSDLLKRLMMK
HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHC
PSLYGTFGKVGVKGIFRSVFGQ
CCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDVIVIGGGPAGSTAARICAKAGLSTRILEEHASIGYPVQCAGLLSNNAFAECEVSDRS
CCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCCHH
VYNTVRGAKICGSEGHSLSFDAKTTKAYVVDRGRLDHEIAVRAAEAGAEFSLKTCVTKLN
HHHHHCCCCEECCCCCEEEECCCCCEEEEEECCCCCHHHHEEEHHCCCCHHHHHHHHHCC
PEKKIIHTAGGEEIPYTILIAADGPRSVAARSLGIPPSSYIYSGIQAEVPWDGDSSLVEL
CCCEEEECCCCCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHCCEEEECCCCCCCCEEEE
HPNAAPDFFAWVIPLSEKRARVGLCGMKNVPDLFAEFLARFPGSVLHSVTGTIPLGIRRK
CCCCCCCCEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCEEEC
TFGSGCMLVGDAAGFPKPTSGGGVYTGIRSARFAAEIAVKSAETGDTTDAFLSGYEALWR
CCCCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
EDFGRELDMGLKALEFRRNLKSEDIDSMIDAMNTPEILDLIVRYGDMDRPSDLLKRLMMK
HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHC
PSLYGTFGKVGVKGIFRSVFGQ
CCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]