Definition Methanocorpusculum labreanum Z chromosome, complete genome.
Accession NC_008942
Length 1,804,962

Click here to switch to the map view.

The map label for this gene is 124486179

Identifier: 124486179

GI number: 124486179

Start: 1382474

End: 1382785

Strand: Reverse

Name: 124486179

Synonym: Mlab_1361

Alternate gene names: NA

Gene position: 1382785-1382474 (Counterclockwise)

Preceding gene: 124486185

Following gene: 124486169

Centisome position: 76.61

GC content: 46.79

Gene sequence:

>312_bases
TTGCGGAGGTTTAACATGAGTTACAGATTTTGGGGTTGGGAGCTAAATATGGCAAATCCGGAAGATATGATCAAGCAGTG
CATTATGATGCTGCATGCAATGAGTGAAGATTCAACGATTCCGCGGAATATCCGCCGCGTGGCCGATGAAACGATGAAGG
TTCTCCAGGATGAGAAGAAAACGATCGGTCTAAGAGCCGCAAGTGCCTTGTCCATGATTGATGAGGTCAGCAATGACTCG
AATATGCCGATCCATGCACGGACCAGGATATGGGAACTTGCTTCGACTCTTGAAGCAATACCCTTTGACTAA

Upstream 100 bases:

>100_bases
CATTATATCCTCGGGTTTTTTCGTCATGGCTGTTTTTCTCTTCTGTACAAATTGGTTTTCAGAGTATATAATGTCTCAAG
AATAAAGGGAGTCTTTATTT

Downstream 100 bases:

>100_bases
CTCTTTTTTTCTAACGATCCGCCGATCTTATTCGCAGACGTGAAGCCCGAGTTTTTCGCTGTCTGCATGCGTCTGAGAAG
TTCGCCTGCTTCATCTGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MRRFNMSYRFWGWELNMANPEDMIKQCIMMLHAMSEDSTIPRNIRRVADETMKVLQDEKKTIGLRAASALSMIDEVSNDS
NMPIHARTRIWELASTLEAIPFD

Sequences:

>Translated_103_residues
MRRFNMSYRFWGWELNMANPEDMIKQCIMMLHAMSEDSTIPRNIRRVADETMKVLQDEKKTIGLRAASALSMIDEVSNDS
NMPIHARTRIWELASTLEAIPFD
>Mature_103_residues
MRRFNMSYRFWGWELNMANPEDMIKQCIMMLHAMSEDSTIPRNIRRVADETMKVLQDEKKTIGLRAASALSMIDEVSNDS
NMPIHARTRIWELASTLEAIPFD

Specific function: Unknown

COG id: COG1698

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0147 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1361_METLZ (A2ST72)

Other databases:

- EMBL:   CP000559
- RefSeq:   YP_001030795.1
- ProteinModelPortal:   A2ST72
- SMR:   A2ST72
- STRING:   A2ST72
- GeneID:   4796069
- GenomeReviews:   CP000559_GR
- KEGG:   mla:Mlab_1361
- eggNOG:   arNOG12624
- HOGENOM:   HBG321640
- OMA:   HTRTLIW
- ProtClustDB:   PRK04330
- BioCyc:   MLAB410358:MLAB_1361-MONOMER
- HAMAP:   MF_00342
- InterPro:   IPR023130
- InterPro:   IPR005354
- ProDom:   PD029943

Pfam domain/function: PF03685 UPF0147

EC number: NA

Molecular weight: Translated: 12021; Mature: 12021

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
9.7 %Met     (Translated Protein)
10.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
9.7 %Met     (Mature Protein)
10.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFNMSYRFWGWELNMANPEDMIKQCIMMLHAMSEDSTIPRNIRRVADETMKVLQDEKK
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
TIGLRAASALSMIDEVSNDSNMPIHARTRIWELASTLEAIPFD
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRRFNMSYRFWGWELNMANPEDMIKQCIMMLHAMSEDSTIPRNIRRVADETMKVLQDEKK
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
TIGLRAASALSMIDEVSNDSNMPIHARTRIWELASTLEAIPFD
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA