| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486185
Identifier: 124486185
GI number: 124486185
Start: 1386979
End: 1388220
Strand: Reverse
Name: 124486185
Synonym: Mlab_1367
Alternate gene names: NA
Gene position: 1388220-1386979 (Counterclockwise)
Preceding gene: 124486199
Following gene: 124486179
Centisome position: 76.91
GC content: 52.25
Gene sequence:
>1242_bases ATGCAGGGACAACGACAAAAGATACTAACAAGGAATGTGAAATATACTCATATGTCCCGACGCATACATACGGGTCTCCT CCTCCTTCTTGCAGCAGTGCTTTTCTGCGGTGCAGGTCAGGCGGTGGTCACCGAAACTCTGAATGAGACCTATCATCTCG GAGATTACTACACGGATATCCTGTCCGTTTCAGCAGCGAATGATGGTGGATATTATCTCGGTATTATCCACGATGATATT TTGTCTCTGGTAAAATCCGATGCGAAAGGAAATGCAATCTGGTCAACCAACGTCACCGGCTCCGAGTTCCGTTTAATCAC GACCTTGTCGGACGGCGGCTGCGTGTACGTGACCTCGCTCGATACCGACACCTATCTCTGCCGTGCGGATCAGACCGGAA AGATCATCTATGAAATTCCACTGACCGGCGTTGGCGCAGGGGTTCAGCCGGTTGTGATCAATGGCAATACGATCAAATTT GCCGGCTGGTTCTGGGAAACCGACACTGGCTTTACCCAGAGTTTTTTGTTGAGTGACGGTACTCCCGCAAACGATCAGCT CTCCCTTCCGGAAGGCAGGATCCCCGTTTCAATGATGAAGAGTGGCGGGGATTATGTTCTGGTTGGCGGGGCAACGTCCA ATGTATCTGCCGTCAGCGATGAAGCCTGGATCATGAAAATTAAAGACGGAGGAACGGTCGTCTGGAATACAGTCATAAAA ACCACCAGTACAGAGCCTGAGTATTACGGCCCCGGAAGCACTGCGTATGCCCTTTGCGAGGGAGAAGACGGAGGGTACTT CGTTACCGGTACTACGGCTCCGTATAATCTCTCCACCGCTTTTGGCATTATCTGGGCCTCAATGATCTCATCCGACGGAA CGGTTACGTGGGAAAAGGAGTTCCGTGGAGCTGTTCCCTACGGCGTTGCGAAACTCGGTGACGATTACCTGATCGCTGGT ACCGGCTGGAACGCTCCTCTCTGGATGACCCTTACACCGGCTGGAGCCTTGCTTCAGGTTGTTTATCCTGAAGTGACTGG TCAGTTCAACTCGGTCGCTCAGGTTTCATCCGGCAGCGTTGTTATGTCCGGGTGGAGTTATCTCACCGGATCGCCCGACG GATATTTGGTCGAGATCACTGATGATTCGGTGCCAGCTGAAAGCCCGGTTCCGATCGCAGGAATCATTCTTGGTCTCTCA GTTGCTGGAATCGCTGCTTTCATCGGCTCGCGCCGTCGGTAA
Upstream 100 bases:
>100_bases GGAGAGAGCTTCGGATGAGGCGATTACCTGGGTTCCGTCGAATTCTGCTTTCACGCGGAGTTAAGGTTTGTTCTCTATTA TCATTAATGAAGGGGGTGTA
Downstream 100 bases:
>100_bases ATCTGCAGAATGATCATTGACAGGGTTGTAAAGCCCCGTTACCAATCTATTTTTCCATAAAGACTCAGTTAAACAGAAAA GATCCCGTCACAAAAAAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 413; Mature: 413
Protein sequence:
>413_residues MQGQRQKILTRNVKYTHMSRRIHTGLLLLLAAVLFCGAGQAVVTETLNETYHLGDYYTDILSVSAANDGGYYLGIIHDDI LSLVKSDAKGNAIWSTNVTGSEFRLITTLSDGGCVYVTSLDTDTYLCRADQTGKIIYEIPLTGVGAGVQPVVINGNTIKF AGWFWETDTGFTQSFLLSDGTPANDQLSLPEGRIPVSMMKSGGDYVLVGGATSNVSAVSDEAWIMKIKDGGTVVWNTVIK TTSTEPEYYGPGSTAYALCEGEDGGYFVTGTTAPYNLSTAFGIIWASMISSDGTVTWEKEFRGAVPYGVAKLGDDYLIAG TGWNAPLWMTLTPAGALLQVVYPEVTGQFNSVAQVSSGSVVMSGWSYLTGSPDGYLVEITDDSVPAESPVPIAGIILGLS VAGIAAFIGSRRR
Sequences:
>Translated_413_residues MQGQRQKILTRNVKYTHMSRRIHTGLLLLLAAVLFCGAGQAVVTETLNETYHLGDYYTDILSVSAANDGGYYLGIIHDDI LSLVKSDAKGNAIWSTNVTGSEFRLITTLSDGGCVYVTSLDTDTYLCRADQTGKIIYEIPLTGVGAGVQPVVINGNTIKF AGWFWETDTGFTQSFLLSDGTPANDQLSLPEGRIPVSMMKSGGDYVLVGGATSNVSAVSDEAWIMKIKDGGTVVWNTVIK TTSTEPEYYGPGSTAYALCEGEDGGYFVTGTTAPYNLSTAFGIIWASMISSDGTVTWEKEFRGAVPYGVAKLGDDYLIAG TGWNAPLWMTLTPAGALLQVVYPEVTGQFNSVAQVSSGSVVMSGWSYLTGSPDGYLVEITDDSVPAESPVPIAGIILGLS VAGIAAFIGSRRR >Mature_413_residues MQGQRQKILTRNVKYTHMSRRIHTGLLLLLAAVLFCGAGQAVVTETLNETYHLGDYYTDILSVSAANDGGYYLGIIHDDI LSLVKSDAKGNAIWSTNVTGSEFRLITTLSDGGCVYVTSLDTDTYLCRADQTGKIIYEIPLTGVGAGVQPVVINGNTIKF AGWFWETDTGFTQSFLLSDGTPANDQLSLPEGRIPVSMMKSGGDYVLVGGATSNVSAVSDEAWIMKIKDGGTVVWNTVIK TTSTEPEYYGPGSTAYALCEGEDGGYFVTGTTAPYNLSTAFGIIWASMISSDGTVTWEKEFRGAVPYGVAKLGDDYLIAG TGWNAPLWMTLTPAGALLQVVYPEVTGQFNSVAQVSSGSVVMSGWSYLTGSPDGYLVEITDDSVPAESPVPIAGIILGLS VAGIAAFIGSRRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43906; Mature: 43906
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGQRQKILTRNVKYTHMSRRIHTGLLLLLAAVLFCGAGQAVVTETLNETYHLGDYYTDI CCCCHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEECCCHHEEH LSVSAANDGGYYLGIIHDDILSLVKSDAKGNAIWSTNVTGSEFRLITTLSDGGCVYVTSL EEEEECCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEEECCCCEEEEEEE DTDTYLCRADQTGKIIYEIPLTGVGAGVQPVVINGNTIKFAGWFWETDTGFTQSFLLSDG CCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEEEEECCCCCCEEEEECCC TPANDQLSLPEGRIPVSMMKSGGDYVLVGGATSNVSAVSDEAWIMKIKDGGTVVWNTVIK CCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCEECCCEEEEEECCCCEEEEEEEEE TTSTEPEYYGPGSTAYALCEGEDGGYFVTGTTAPYNLSTAFGIIWASMISSDGTVTWEKE ECCCCCCEECCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEHHH FRGAVPYGVAKLGDDYLIAGTGWNAPLWMTLTPAGALLQVVYPEVTGQFNSVAQVSSGSV CCCCCCCCHHHCCCCEEEEECCCCCEEEEEECCCCCEEEEEEHHHCCCCCCEEEECCCCE VMSGWSYLTGSPDGYLVEITDDSVPAESPVPIAGIILGLSVAGIAAFIGSRRR EEECCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQGQRQKILTRNVKYTHMSRRIHTGLLLLLAAVLFCGAGQAVVTETLNETYHLGDYYTDI CCCCHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEECCCHHEEH LSVSAANDGGYYLGIIHDDILSLVKSDAKGNAIWSTNVTGSEFRLITTLSDGGCVYVTSL EEEEECCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEEECCCCEEEEEEE DTDTYLCRADQTGKIIYEIPLTGVGAGVQPVVINGNTIKFAGWFWETDTGFTQSFLLSDG CCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEEEEECCCCCCEEEEECCC TPANDQLSLPEGRIPVSMMKSGGDYVLVGGATSNVSAVSDEAWIMKIKDGGTVVWNTVIK CCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCEECCCEEEEEECCCCEEEEEEEEE TTSTEPEYYGPGSTAYALCEGEDGGYFVTGTTAPYNLSTAFGIIWASMISSDGTVTWEKE ECCCCCCEECCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEHHH FRGAVPYGVAKLGDDYLIAGTGWNAPLWMTLTPAGALLQVVYPEVTGQFNSVAQVSSGSV CCCCCCCCHHHCCCCEEEEECCCCCEEEEEECCCCCEEEEEEHHHCCCCCCEEEECCCCE VMSGWSYLTGSPDGYLVEITDDSVPAESPVPIAGIILGLSVAGIAAFIGSRRR EEECCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA