| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486047
Identifier: 124486047
GI number: 124486047
Start: 1256627
End: 1257139
Strand: Reverse
Name: 124486047
Synonym: Mlab_1227
Alternate gene names: NA
Gene position: 1257139-1256627 (Counterclockwise)
Preceding gene: 124486048
Following gene: 124486046
Centisome position: 69.65
GC content: 56.14
Gene sequence:
>513_bases ATGGGTGCCGGAGCACAGTCGGCGGTTCTCCGCGATCTGCAGAAGGCTCACGGCAAACTGCAGGATGTCTCGCGCTATAT CATTCCGCGTGACGATCTGGCGATCGCCTATGCGACCGCCGACGCCGTCGACAAGAAAGGCGTCGCCATCGCCAGAGGTT CGAGCGTAGGGTTCGGCGTCGATGAACCGATCGTCAAGACCCTTCTTACCGTCCGGCGTTTCGATCCCACCATTCGCTCG GCGGCATGCATACGCTATGAGGACGATATCCTCGCAACTGCTGTCGAAACTCTTCGGGATGTCGAGGTTTATGACCCGGA AAAGTTTCCGGCCGGTATCTCGACCATGGACTGGGGGATCGCTTCGGTATGCAGAAAAGGCGTGCCGCTTGCCATAGCAA ATCCCGAATCTTCCCGCGGACCGGGCAGGATATGCCTCCTTGGAACCACTCCTGAGGAGGTAGCAAACAGAATACTTATC ATATCTCAACGTCTTACATATATAGACATCTGA
Upstream 100 bases:
>100_bases CAAGGATCGCTCTTGGCGACGCTCTTATCCCGAGGGAACGAATGTATGAGATCGCTATCTCCGAGATCACTGCGGTAAAA GACGAACTGGGGCTGAACTG
Downstream 100 bases:
>100_bases GGAATACTCATGGGAATCAAGCCAAGTTATATCAAATCAATGGGCATCGCCCTTCTCGAACAGCACGGAAAAAGCTTCAA CGGCAACTTTGACGACAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MGAGAQSAVLRDLQKAHGKLQDVSRYIIPRDDLAIAYATADAVDKKGVAIARGSSVGFGVDEPIVKTLLTVRRFDPTIRS AACIRYEDDILATAVETLRDVEVYDPEKFPAGISTMDWGIASVCRKGVPLAIANPESSRGPGRICLLGTTPEEVANRILI ISQRLTYIDI
Sequences:
>Translated_170_residues MGAGAQSAVLRDLQKAHGKLQDVSRYIIPRDDLAIAYATADAVDKKGVAIARGSSVGFGVDEPIVKTLLTVRRFDPTIRS AACIRYEDDILATAVETLRDVEVYDPEKFPAGISTMDWGIASVCRKGVPLAIANPESSRGPGRICLLGTTPEEVANRILI ISQRLTYIDI >Mature_169_residues GAGAQSAVLRDLQKAHGKLQDVSRYIIPRDDLAIAYATADAVDKKGVAIARGSSVGFGVDEPIVKTLLTVRRFDPTIRSA ACIRYEDDILATAVETLRDVEVYDPEKFPAGISTMDWGIASVCRKGVPLAIANPESSRGPGRICLLGTTPEEVANRILII SQRLTYIDI
Specific function: Unknown
COG id: COG1992
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18341; Mature: 18210
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAGAQSAVLRDLQKAHGKLQDVSRYIIPRDDLAIAYATADAVDKKGVAIARGSSVGFGV CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEECHHHCCCCEEEECCCCCCCCC DEPIVKTLLTVRRFDPTIRSAACIRYEDDILATAVETLRDVEVYDPEKFPAGISTMDWGI CHHHHHHHHHHHHCCCCHHHEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH ASVCRKGVPLAIANPESSRGPGRICLLGTTPEEVANRILIISQRLTYIDI HHHHHCCCCEEEECCCCCCCCCEEEEEECCHHHHHCEEEEEECCEEEECC >Mature Secondary Structure GAGAQSAVLRDLQKAHGKLQDVSRYIIPRDDLAIAYATADAVDKKGVAIARGSSVGFGV CCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEECHHHCCCCEEEECCCCCCCCC DEPIVKTLLTVRRFDPTIRSAACIRYEDDILATAVETLRDVEVYDPEKFPAGISTMDWGI CHHHHHHHHHHHHCCCCHHHEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH ASVCRKGVPLAIANPESSRGPGRICLLGTTPEEVANRILIISQRLTYIDI HHHHHCCCCEEEECCCCCCCCCEEEEEECCHHHHHCEEEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA