Click here to switch to the map view.

The map label for this gene is ydcP [H]

Identifier: 124485979

GI number: 124485979

Start: 1175447

End: 1177798

Strand: Reverse

Name: ydcP [H]

Synonym: Mlab_1159

Alternate gene names: 124485979

Gene position: 1177798-1175447 (Counterclockwise)

Preceding gene: 124485980

Following gene: 124485975

Centisome position: 65.25

GC content: 56.72

Gene sequence:

>2352_bases
ATGGTTATTCCTGAACTCTTATCTCCTGCGGGTTCGCCCGATGCTTTGAAAGCCGCTGTATTTGCCGGGTGCGATGCTGT
TTATCTCGGCGGGAAATCATTTGGTGCACGCCAGTATGCGGCGAACTTCTCAAACGAAGAATTGAAAAGTGCAGTTCTGT
TCGCCCATCAGTACGGCGTCAAAGTCTATGTGACCGTCAACACGCTCGCATACGATGATGATATGCCGGGAATCGCCGGG
TATCTCCGGTTCCTCTCGGATATCGGCGTCGATGCGATCCTGGTACAGGATGTCGGTCTTCTCTCTCTTGCAAGAGAGAT
CGTGCCGGATCTTCCGCTGCACGCAAGCACGCAGATGACGATCCATAACGCGGCAGGTGTTCGGTTCGCCGCCGAACACG
GCGTCTCGCGTGTGGTGCTCGCCCGCGAACTTCCGTTCGATGACGTGAACAGAATAGCCGAAGCTGCCAAAGAGGTCGGC
GTCGAGCTGGAGATCTTCATTCACGGAGCGATCTGCTATGCATATTCAGGCCAGTGTCTCTTTTCGTCCGTGATCGGCGG
ACGAAGCGGGAATCAGGGGGCCTGTGCCCAGCCGTGCCGAAAACCCTACTCTCTCCTAGCCGATGGAGAGACCCTGCCGA
CCCAGGGAGATTATCATCTCTCCCCGCGTGATCTGTGTCTGTATCCCTATCTTGAAGAGATCTGCAGTCTCGGGGTCGCG
GCGGTCAAGATCGAAGGAAGGATGAAGACACCTGAGTATGTAGGAATCGTCACCGATGCCTACCGCCGGGGTCTTGATAC
GATCGCCGCAGGCGAAGAGTTCGTTCCCGATAACGAAACGATGGAGGATCTTGCCTTTGCGTTCAACCGCGGGTTTACGA
AAGGATATCTTTTCGGCGACAAGTGGGGGACCTTCATCAATGCGAAAAAGCCCGACAACCGCGGTGTCTATGCAGGATTT
GTGTCCGGGCTGGACGAGTCCCGCGGCAAGGTGATCGTGAAAATCGAAGGCCCGGTCCCTGATACGGGAGACGGTCTGGT
GTTCAAGATCGCCGGCCGCGAGACTGGGTTCGCACTAAATAAAGAGCCGTATATCTTCCCGGAAGGGGACGCCTATAAGA
TCCCTGCTCCGGCTGACGTTGTCTTAGGCAGCGAACTCTGGATTACCCGCCGGATGAAGACCGAACGAAAAGCGGCCGCG
ATCCTTTCAAAACCTTCCGCCGGCAGAATCCCACTCGACATCGTCGTCTCGGTCGACAAAGCGGGGCGTCTGACCGTCTC
TTCGGATGGTGTGGAGGTCAAAACCGAGATGCCGATGCTTGAGGCGCTGAACAAACCCGTGTCCAAAGAGTCGGTCGAAA
CCCAGATGCGAAAGACCGGCGGGACTCCGTTCTTTATTCAAACGCTTTCGATGCAGTACGACGGCACGATGTTTTTGCCG
ATGAGCGTTATCACGGATCTTCGCCGGAAGTTTCTGGATGCGGCGGCTCTGGCCCGAAAACCGGTCCGGACCACCCGTCC
ATATGCGGAAAAAGGCACGGCGGTCCCGGCGCGGACGACGCCGATCGTTCAGGTCTATACCGACAGCGTTGTCGGGGCAA
AGGCCGCCCACTCGGCCGGAGCAGGACAGGTCGTCTACGAAGGATTTGAGGAGATCTACGATCTTCCAATCATCTATAAA
CTCCCGCGGATCGTTCAGGAACACGAATTTGCTTCCGCTTTTTCAAAGATCCCCCCCGGAGCCGCCGGCGTGATGGTCGA
CGGTGTCGGGGCTGCCGAGAGTATCAAGGGCGTGCCGAAATACGGCGGGTCGGGTCTGAACATCACGAATGCCCGTTCGG
CCGTTACGTATGGAAAGAGCTGCCGTCAGGTCTGTCTTTCGCCGGAACTCTCTGGAAAACAGATCAGAACGCTGATGGAG
CATCTTTCTGCATATGCTCATCCGCCGAAGACCGAGGTGATCGTTCAGGGAAGTCTTGAGGTGATGATCTCCGAGAACTG
TATTCCTGCAATGGTCCAGGGATGCCGGAGCTGCAGTCAGTCCTGGGCGCTGAAGGATAAAACGAACAGGATATTCCGGG
TCAGGACCGATTCCCAGTGCCGGGGTCATATCCTGAACTCGTCTGAGACCTGCCTGATCGAGTATGTCGGCAAACTCGCG
TCGGCCGGTGTCTCCGTCATCTCGATCGATGCACGCGGCCGAAGTCCCGAGTATATCCGGCGGATGACGGCAATATACAC
GGCGGTCGTCGACGGAACCGGCGACCCGAAAGAACTCAAGGAACAGATAAAAGATATCGCTTCCGGCGGCATCACGGCAG
GGCATTACCTGCGCGGCGTCGTCAGAGAATAA

Upstream 100 bases:

>100_bases
GTCACGGAAAACGTTATTGTCGGTCAGCCGATTCTTCTCGGTACCGGCGATGTCAAACTGATGGTCCGCCGCGTGGCACC
TCAGTAATCTTTTTTTTATC

Downstream 100 bases:

>100_bases
CACTATTTTATTTTTGCCTGATCAGATTATTCTTCTGAAGGCTATTCTACCCTCATTTGGACAGTTTTTCCCGTCGAGAA
AGTCGTTCCCCTGCTTGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 783; Mature: 783

Protein sequence:

>783_residues
MVIPELLSPAGSPDALKAAVFAGCDAVYLGGKSFGARQYAANFSNEELKSAVLFAHQYGVKVYVTVNTLAYDDDMPGIAG
YLRFLSDIGVDAILVQDVGLLSLAREIVPDLPLHASTQMTIHNAAGVRFAAEHGVSRVVLARELPFDDVNRIAEAAKEVG
VELEIFIHGAICYAYSGQCLFSSVIGGRSGNQGACAQPCRKPYSLLADGETLPTQGDYHLSPRDLCLYPYLEEICSLGVA
AVKIEGRMKTPEYVGIVTDAYRRGLDTIAAGEEFVPDNETMEDLAFAFNRGFTKGYLFGDKWGTFINAKKPDNRGVYAGF
VSGLDESRGKVIVKIEGPVPDTGDGLVFKIAGRETGFALNKEPYIFPEGDAYKIPAPADVVLGSELWITRRMKTERKAAA
ILSKPSAGRIPLDIVVSVDKAGRLTVSSDGVEVKTEMPMLEALNKPVSKESVETQMRKTGGTPFFIQTLSMQYDGTMFLP
MSVITDLRRKFLDAAALARKPVRTTRPYAEKGTAVPARTTPIVQVYTDSVVGAKAAHSAGAGQVVYEGFEEIYDLPIIYK
LPRIVQEHEFASAFSKIPPGAAGVMVDGVGAAESIKGVPKYGGSGLNITNARSAVTYGKSCRQVCLSPELSGKQIRTLME
HLSAYAHPPKTEVIVQGSLEVMISENCIPAMVQGCRSCSQSWALKDKTNRIFRVRTDSQCRGHILNSSETCLIEYVGKLA
SAGVSVISIDARGRSPEYIRRMTAIYTAVVDGTGDPKELKEQIKDIASGGITAGHYLRGVVRE

Sequences:

>Translated_783_residues
MVIPELLSPAGSPDALKAAVFAGCDAVYLGGKSFGARQYAANFSNEELKSAVLFAHQYGVKVYVTVNTLAYDDDMPGIAG
YLRFLSDIGVDAILVQDVGLLSLAREIVPDLPLHASTQMTIHNAAGVRFAAEHGVSRVVLARELPFDDVNRIAEAAKEVG
VELEIFIHGAICYAYSGQCLFSSVIGGRSGNQGACAQPCRKPYSLLADGETLPTQGDYHLSPRDLCLYPYLEEICSLGVA
AVKIEGRMKTPEYVGIVTDAYRRGLDTIAAGEEFVPDNETMEDLAFAFNRGFTKGYLFGDKWGTFINAKKPDNRGVYAGF
VSGLDESRGKVIVKIEGPVPDTGDGLVFKIAGRETGFALNKEPYIFPEGDAYKIPAPADVVLGSELWITRRMKTERKAAA
ILSKPSAGRIPLDIVVSVDKAGRLTVSSDGVEVKTEMPMLEALNKPVSKESVETQMRKTGGTPFFIQTLSMQYDGTMFLP
MSVITDLRRKFLDAAALARKPVRTTRPYAEKGTAVPARTTPIVQVYTDSVVGAKAAHSAGAGQVVYEGFEEIYDLPIIYK
LPRIVQEHEFASAFSKIPPGAAGVMVDGVGAAESIKGVPKYGGSGLNITNARSAVTYGKSCRQVCLSPELSGKQIRTLME
HLSAYAHPPKTEVIVQGSLEVMISENCIPAMVQGCRSCSQSWALKDKTNRIFRVRTDSQCRGHILNSSETCLIEYVGKLA
SAGVSVISIDARGRSPEYIRRMTAIYTAVVDGTGDPKELKEQIKDIASGGITAGHYLRGVVRE
>Mature_783_residues
MVIPELLSPAGSPDALKAAVFAGCDAVYLGGKSFGARQYAANFSNEELKSAVLFAHQYGVKVYVTVNTLAYDDDMPGIAG
YLRFLSDIGVDAILVQDVGLLSLAREIVPDLPLHASTQMTIHNAAGVRFAAEHGVSRVVLARELPFDDVNRIAEAAKEVG
VELEIFIHGAICYAYSGQCLFSSVIGGRSGNQGACAQPCRKPYSLLADGETLPTQGDYHLSPRDLCLYPYLEEICSLGVA
AVKIEGRMKTPEYVGIVTDAYRRGLDTIAAGEEFVPDNETMEDLAFAFNRGFTKGYLFGDKWGTFINAKKPDNRGVYAGF
VSGLDESRGKVIVKIEGPVPDTGDGLVFKIAGRETGFALNKEPYIFPEGDAYKIPAPADVVLGSELWITRRMKTERKAAA
ILSKPSAGRIPLDIVVSVDKAGRLTVSSDGVEVKTEMPMLEALNKPVSKESVETQMRKTGGTPFFIQTLSMQYDGTMFLP
MSVITDLRRKFLDAAALARKPVRTTRPYAEKGTAVPARTTPIVQVYTDSVVGAKAAHSAGAGQVVYEGFEEIYDLPIIYK
LPRIVQEHEFASAFSKIPPGAAGVMVDGVGAAESIKGVPKYGGSGLNITNARSAVTYGKSCRQVCLSPELSGKQIRTLME
HLSAYAHPPKTEVIVQGSLEVMISENCIPAMVQGCRSCSQSWALKDKTNRIFRVRTDSQCRGHILNSSETCLIEYVGKLA
SAGVSVISIDARGRSPEYIRRMTAIYTAVVDGTGDPKELKEQIKDIASGGITAGHYLRGVVRE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=646, Percent_Identity=29.8761609907121, Blast_Score=228, Evalue=8e-61,
Organism=Escherichia coli, GI1788397, Length=443, Percent_Identity=29.5711060948081, Blast_Score=176, Evalue=5e-45,
Organism=Escherichia coli, GI1789548, Length=315, Percent_Identity=33.015873015873, Blast_Score=148, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 84468; Mature: 84468

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIPELLSPAGSPDALKAAVFAGCDAVYLGGKSFGARQYAANFSNEELKSAVLFAHQYGV
CCCCHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHEECCE
KVYVTVNTLAYDDDMPGIAGYLRFLSDIGVDAILVQDVGLLSLAREIVPDLPLHASTQMT
EEEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCEEE
IHNAAGVRFAAEHGVSRVVLARELPFDDVNRIAEAAKEVGVELEIFIHGAICYAYSGQCL
EECCCCCEEHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCHHH
FSSVIGGRSGNQGACAQPCRKPYSLLADGETLPTQGDYHLSPRDLCLYPYLEEICSLGVA
HHHHHCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCEE
AVKIEGRMKTPEYVGIVTDAYRRGLDTIAAGEEFVPDNETMEDLAFAFNRGFTKGYLFGD
EEEEECCCCCCCEEEEEHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
KWGTFINAKKPDNRGVYAGFVSGLDESRGKVIVKIEGPVPDTGDGLVFKIAGRETGFALN
CCCCEEECCCCCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEC
KEPYIFPEGDAYKIPAPADVVLGSELWITRRMKTERKAAAILSKPSAGRIPLDIVVSVDK
CCCEEECCCCCEECCCCCCEEECCHHEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
AGRLTVSSDGVEVKTEMPMLEALNKPVSKESVETQMRKTGGTPFFIQTLSMQYDGTMFLP
CCEEEECCCCEEEEECCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEH
MSVITDLRRKFLDAAALARKPVRTTRPYAEKGTAVPARTTPIVQVYTDSVVGAKAAHSAG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCEEEEECCCHHCCHHHCCCC
AGQVVYEGFEEIYDLPIIYKLPRIVQEHEFASAFSKIPPGAAGVMVDGVGAAESIKGVPK
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCCCC
YGGSGLNITNARSAVTYGKSCRQVCLSPELSGKQIRTLMEHLSAYAHPPKTEVIVQGSLE
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCEE
VMISENCIPAMVQGCRSCSQSWALKDKTNRIFRVRTDSQCRGHILNSSETCLIEYVGKLA
EEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEECCCCCHHHHHHHHHHH
SAGVSVISIDARGRSPEYIRRMTAIYTAVVDGTGDPKELKEQIKDIASGGITAGHYLRGV
HCCCEEEEEECCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
VRE
HCC
>Mature Secondary Structure
MVIPELLSPAGSPDALKAAVFAGCDAVYLGGKSFGARQYAANFSNEELKSAVLFAHQYGV
CCCCHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHHHEECCE
KVYVTVNTLAYDDDMPGIAGYLRFLSDIGVDAILVQDVGLLSLAREIVPDLPLHASTQMT
EEEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCEEE
IHNAAGVRFAAEHGVSRVVLARELPFDDVNRIAEAAKEVGVELEIFIHGAICYAYSGQCL
EECCCCCEEHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCHHH
FSSVIGGRSGNQGACAQPCRKPYSLLADGETLPTQGDYHLSPRDLCLYPYLEEICSLGVA
HHHHHCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCEE
AVKIEGRMKTPEYVGIVTDAYRRGLDTIAAGEEFVPDNETMEDLAFAFNRGFTKGYLFGD
EEEEECCCCCCCEEEEEHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
KWGTFINAKKPDNRGVYAGFVSGLDESRGKVIVKIEGPVPDTGDGLVFKIAGRETGFALN
CCCCEEECCCCCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEC
KEPYIFPEGDAYKIPAPADVVLGSELWITRRMKTERKAAAILSKPSAGRIPLDIVVSVDK
CCCEEECCCCCEECCCCCCEEECCHHEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
AGRLTVSSDGVEVKTEMPMLEALNKPVSKESVETQMRKTGGTPFFIQTLSMQYDGTMFLP
CCEEEECCCCEEEEECCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEH
MSVITDLRRKFLDAAALARKPVRTTRPYAEKGTAVPARTTPIVQVYTDSVVGAKAAHSAG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCEEEEECCCHHCCHHHCCCC
AGQVVYEGFEEIYDLPIIYKLPRIVQEHEFASAFSKIPPGAAGVMVDGVGAAESIKGVPK
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCCCC
YGGSGLNITNARSAVTYGKSCRQVCLSPELSGKQIRTLMEHLSAYAHPPKTEVIVQGSLE
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCEE
VMISENCIPAMVQGCRSCSQSWALKDKTNRIFRVRTDSQCRGHILNSSETCLIEYVGKLA
EEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEECCCCCHHHHHHHHHHH
SAGVSVISIDARGRSPEYIRRMTAIYTAVVDGTGDPKELKEQIKDIASGGITAGHYLRGV
HCCCEEEEEECCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
VRE
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]