| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485927
Identifier: 124485927
GI number: 124485927
Start: 1118410
End: 1118976
Strand: Reverse
Name: 124485927
Synonym: Mlab_1107
Alternate gene names: NA
Gene position: 1118976-1118410 (Counterclockwise)
Preceding gene: 124485928
Following gene: 124485924
Centisome position: 61.99
GC content: 53.79
Gene sequence:
>567_bases GTGGCAGTGGGACTGTTAGGCGAAGGGATCACCGAAGTGATCGCGGTCACTAAGGATAATGCGGCCCCTATCGGGATCAT CGTGCGGTCCGGTCAGGCACCGAAGATGATCCTTTTCAAGGGGTCGAAGACGGCGGAGAATGTGGAAAAGTACGGCTGGG TAACGGCGAACTTCGTGAGTGACTCGTATCTCTATCCTCTGTATGCGTTTTCCGACGTGGCAAAGTCGGATCTGAGAAAG GTGTTTGTCGGTGAGATGGTCATGCAGCTGCTTCGCGATGCTGATGCATGGATGGCGTTTACCGCCCAGATCGTCAACGA GACGAAGGATGCGTATTTTGTGGAGCTTGAACCGGTGGGATCTGAGTACTGCCGTGATGAGATGCGGCCGGTGAACCGGG GCTTTAATTCGGTGATCGATGCGACGGTCCATGCAACACGGTATGTGATGAATCATGATCCAGAGCTTCGTGAACTGATC GAGTATCATCTGGGAATCGTTCGAAAGTGCGGGGGACCGAGGGATATTGAGGCGGCGGCACTGATTAAAGAGGTCTGCGG GTTTTAA
Upstream 100 bases:
>100_bases CACTGAGCAGGTTCGACGAGGAGTGTATCCTCGGCGGGGTGAATCCGGGTTCCCTTGCGGACATCTGCATCGCGGGGATA TTCACCGCACTTCTGGAGGG
Downstream 100 bases:
>100_bases GCAGATCATTTCAAAAGAGATTGACTGTCTTCATTTAACGTTGTGTTAAATTCATCTCCCCATTTTTACAACATACGAAA GACGTATGCCGAGAATACCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MAVGLLGEGITEVIAVTKDNAAPIGIIVRSGQAPKMILFKGSKTAENVEKYGWVTANFVSDSYLYPLYAFSDVAKSDLRK VFVGEMVMQLLRDADAWMAFTAQIVNETKDAYFVELEPVGSEYCRDEMRPVNRGFNSVIDATVHATRYVMNHDPELRELI EYHLGIVRKCGGPRDIEAAALIKEVCGF
Sequences:
>Translated_188_residues MAVGLLGEGITEVIAVTKDNAAPIGIIVRSGQAPKMILFKGSKTAENVEKYGWVTANFVSDSYLYPLYAFSDVAKSDLRK VFVGEMVMQLLRDADAWMAFTAQIVNETKDAYFVELEPVGSEYCRDEMRPVNRGFNSVIDATVHATRYVMNHDPELRELI EYHLGIVRKCGGPRDIEAAALIKEVCGF >Mature_187_residues AVGLLGEGITEVIAVTKDNAAPIGIIVRSGQAPKMILFKGSKTAENVEKYGWVTANFVSDSYLYPLYAFSDVAKSDLRKV FVGEMVMQLLRDADAWMAFTAQIVNETKDAYFVELEPVGSEYCRDEMRPVNRGFNSVIDATVHATRYVMNHDPELRELIE YHLGIVRKCGGPRDIEAAALIKEVCGF
Specific function: Unknown
COG id: COG2457
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20888; Mature: 20757
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVGLLGEGITEVIAVTKDNAAPIGIIVRSGQAPKMILFKGSKTAENVEKYGWVTANFVS CCCCCCCCCHHHHHEECCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHCCEEEEECC DSYLYPLYAFSDVAKSDLRKVFVGEMVMQLLRDADAWMAFTAQIVNETKDAYFVELEPVG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCC SEYCRDEMRPVNRGFNSVIDATVHATRYVMNHDPELRELIEYHLGIVRKCGGPRDIEAAA HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH LIKEVCGF HHHHHHCC >Mature Secondary Structure AVGLLGEGITEVIAVTKDNAAPIGIIVRSGQAPKMILFKGSKTAENVEKYGWVTANFVS CCCCCCCCHHHHHEECCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHCCEEEEECC DSYLYPLYAFSDVAKSDLRKVFVGEMVMQLLRDADAWMAFTAQIVNETKDAYFVELEPVG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCC SEYCRDEMRPVNRGFNSVIDATVHATRYVMNHDPELRELIEYHLGIVRKCGGPRDIEAAA HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH LIKEVCGF HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA