| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485820
Identifier: 124485820
GI number: 124485820
Start: 1001961
End: 1002494
Strand: Reverse
Name: 124485820
Synonym: Mlab_1000
Alternate gene names: NA
Gene position: 1002494-1001961 (Counterclockwise)
Preceding gene: 124485828
Following gene: 124485819
Centisome position: 55.54
GC content: 54.12
Gene sequence:
>534_bases ATGGCGGTTATTCTTATCTGGGCCTGCTGTGTCGGCTGGGTCTATTTCGTTGCGTTAGGCGAACCGTTTTTTGTTCTGAT CGGAGAGATTTCTCTCGGCGTTCTTGCTGCGATTGTGATCTTCGTTCTGATCTGGTCGCGTCTGTATTACGCCTCGGTCG TGTATCATCTGAATGATACGGAGATGACCTGGAAACGCGGTGTCTGGTTTAGAAAGACCGGCATTGTCCCCTACAACCGT ATCACGAACGTGGATATCGTTCAGGGCCCCGTGATGCGGATCTTCGGCATCTCGAATTTAAAAATCGAGACAGCCGGCGG GAACTCCGGGAAGAACTCGGCCGAGATTCAGCTGGAAGGCATCGCCGATCCCGAGCCGCTGCGTGCCATGATCATGGATT TCGTTCGCGGCAATGCCCCAAGCCCTGCGGCGACCGGCGTTGATTTCGGCAGACGTTCTGCTCCGGCAGATATGCAGGCA CTTCTTGCCGAGGTCACGGCGATTCGAAAGCTTCTGGAAGCAGAGAGAAAATAA
Upstream 100 bases:
>100_bases CTTATTGTATCTGCCGGTACATCTGTTTTTCATGGTTAAACTCGGTGAAGATTTTAAGCCGGCGGCGAAGTATACTTCGT ATCTGGCACTTGCGAGCGTC
Downstream 100 bases:
>100_bases GGTTTTGTGATCCTGTGGGCGGATCATCAAAACTCCCTCCCCTCTTTTTTTTCAAAATTCCCCTGACAGAAACTCTTTTT ACTCTTTCTGCCTAAATACA
Product: hypothetical protein
Products: NA
Alternate protein names: Membrane-Flanked Domain Protein
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MAVILIWACCVGWVYFVALGEPFFVLIGEISLGVLAAIVIFVLIWSRLYYASVVYHLNDTEMTWKRGVWFRKTGIVPYNR ITNVDIVQGPVMRIFGISNLKIETAGGNSGKNSAEIQLEGIADPEPLRAMIMDFVRGNAPSPAATGVDFGRRSAPADMQA LLAEVTAIRKLLEAERK
Sequences:
>Translated_177_residues MAVILIWACCVGWVYFVALGEPFFVLIGEISLGVLAAIVIFVLIWSRLYYASVVYHLNDTEMTWKRGVWFRKTGIVPYNR ITNVDIVQGPVMRIFGISNLKIETAGGNSGKNSAEIQLEGIADPEPLRAMIMDFVRGNAPSPAATGVDFGRRSAPADMQA LLAEVTAIRKLLEAERK >Mature_176_residues AVILIWACCVGWVYFVALGEPFFVLIGEISLGVLAAIVIFVLIWSRLYYASVVYHLNDTEMTWKRGVWFRKTGIVPYNRI TNVDIVQGPVMRIFGISNLKIETAGGNSGKNSAEIQLEGIADPEPLRAMIMDFVRGNAPSPAATGVDFGRRSAPADMQAL LAEVTAIRKLLEAERK
Specific function: Unknown
COG id: COG3428
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19518; Mature: 19387
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVILIWACCVGWVYFVALGEPFFVLIGEISLGVLAAIVIFVLIWSRLYYASVVYHLNDT CHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EMTWKRGVWFRKTGIVPYNRITNVDIVQGPVMRIFGISNLKIETAGGNSGKNSAEIQLEG CCHHHCCCEEEECCCCCCCCCCCCEECCCCHHHHCCCCCEEEEECCCCCCCCCEEEEEEC IADPEPLRAMIMDFVRGNAPSPAATGVDFGRRSAPADMQALLAEVTAIRKLLEAERK CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AVILIWACCVGWVYFVALGEPFFVLIGEISLGVLAAIVIFVLIWSRLYYASVVYHLNDT HHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EMTWKRGVWFRKTGIVPYNRITNVDIVQGPVMRIFGISNLKIETAGGNSGKNSAEIQLEG CCHHHCCCEEEECCCCCCCCCCCCEECCCCHHHHCCCCCEEEEECCCCCCCCCEEEEEEC IADPEPLRAMIMDFVRGNAPSPAATGVDFGRRSAPADMQALLAEVTAIRKLLEAERK CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA