| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is uvrA [H]
Identifier: 124485797
GI number: 124485797
Start: 971847
End: 974642
Strand: Reverse
Name: uvrA [H]
Synonym: Mlab_0976
Alternate gene names: 124485797
Gene position: 974642-971847 (Counterclockwise)
Preceding gene: 124485798
Following gene: 124485795
Centisome position: 54.0
GC content: 56.76
Gene sequence:
>2796_bases ATGAAAAACCTGATCGTGAAGGGTGCCAGACAGCACAACCTTCAGAATATCAATATAGAACTCCCGCGTGACAAACTGAT CGTCGTCACCGGGGTTTCGGGCTCGGGAAAATCCACACTCGCTTTTGATACGATTTATGCGGAAGGGCACCGCAGATACG TCGAATCTCTCTCCGCCTACGCCCGCCAGTTCCTCGGACTGATGAGCAAACCCGATGTTGATTCCATCGAAGGCCTCTCC CCCGCAATATCCATCGAACAGAAAACCACTTCGAAAAATCCGCGCTCTACCGTAGGTACGGTGACGGAGATCTATGACTA CCTGCGGTTATTGTATGCCAGGATCGGGATTCCCTACTGTCCGATCCATCACGTAAAAATCGAGTCGAGGACGCCTGGTC AGATCGCCGATTCGATCCAGAAGGAGTATCCGGAGACGATGGTCACGATCCTCGCCCCGATCATCCGCAAGAAGAAAGGG ACGTATGAACAGTTGTTCCGCGATCTGCATGCCGACGGCTTTGCAAGGGTTCGGGTCGACGGCGAGATTTTCCGGACCGA CGACGAGATCAAGCTCGGCAGATACATCATGCACAACATCGATGTCGTCATCGACCGGGTGGAAACGTCCGACCGGAGCC GGCTGACCGAGGCGATCGAATCGGCACTGAAGCACGCCGAAGACGGGCTCGTGTATGCGAACGCCGGCGAGACGGACTCC GTCTACTCGGCACGGATGGCATGTCCCGTCTGCGGTCTCTCGTTCGAGGAGCTCCAGCCGAGAATGTTCTCCTTCAACAG TCCGTTCGGGGCCTGTCCGACCTGTAACGGTCTTGGGTTCCAGATGGTCTTCGATCCCGACCTGATCATCCCGGACAAGA GCCTCTCTCTTGCCGACGGCGCCGTCGCCGTGTACAAAAATTTCCTCGACGGGTTCCGTGTCCAGTATCTGGACGCCGTC GCGAAACATCTCGGCTTCACGCTGATGACGCCGGTGAGCGAGTTCACCAAAGAGCAGTATGACGGGCTGATGTACGGCGT GAACCAGGACATGAAGTTCCGCCACACCTCGAAAAATGCCGAGTGGGCCTATCACGGGACCTGGGAGGGGCTGCTTCCCC AGACCGAACGCCTGTATAAGGAGACGAAGTCTGAGTACCGCAAAGAAGAGCTTGAGAAGTTCATGCGGATCCTTCCCTGT CCGACCTGTCACGGAAAACGGCTGAAGGATCACGTGCTCGCGGTCAAAGTGGGCGGTCAATCCATCGCGGACGTCGCCGA TATGTCGATCGATGCGGCCCTCGAGTTCTTCGAGTCTCTGCCGCTTTCTGAAAAGGAAGAGGAGATCGCGAGGCTGATCC TTCGGGAGATCAAGTCCAGACTGAACTTCCTGAAGTCGGTCGGTCTTGGATATCTGACGCTTTCCCGGAGTGCGGGGAGT CTTTCCGGCGGGGAGGCCCAGCGTATCCGGCTCGCCACCCAGATCGGTTCGAACCTGATGGGGGTTTTGTATATTCTGGA TGAGCCGTCGATCGGTCTCCACCAGCGGGACAACCAGAAACTTATCCAGACCCTGCAGAAGCTTCGGGATCTTGGAAACA CGCTCATCGTGGTCGAACACGACGAGGACACGATCCGGGCGGCCGACTACGTAGTGGATATCGGTCCCGGGGCAGGCGTT CACGGCGGGAAAGTCGTTGCCGAAGGAACGCCGGATATGATCGAAACGTTCCCGGAGTCTTTGACGGGAAAGTATCTTTC GGGCGAGCTTTCTATTCCCGTCCCCGAGAAGAGACGGCCGGCGAAGCGGTTCATCCGGCTCAACGGTTGCACGGAGAACA ATCTGAAAAATATCGATGCGGCGATCCCGCTTGGGACGCTGACGGTCGTAACTGGCGTTTCGGGTTCGGGAAAATCCACG CTGATCTACGATACGCTGTATCAGGCCCTGATGAAGGAGTTGTATAAGTCGAAGGTGACGCCGGGGGCATATAAGGAGCT GATCTTCGAGTCGGAGATCGACAAGGTGATCGTGATCGATCAGTCGCCTATCGGGCGGACGCCGCGGTCGAATCCGGCGA CCTACACGAAGGTGTTCGACGATATCCGGAAATTGTTTGCCGAGACGAAGGAGGCGAAGCTGCGGGGATACGGCCCGGGG CGGTTTTCGTTCAATATCAAAGGCGGCCGCTGCGAGGCGTGTTCGGGGGACGGCGTGATGAAGATCGAGATGAATTTCCT GCCTGATGTGTATATCGAGTGCGAGGAGTGTAAGGGGACCCGGTATAATGAGGAGACGCTCGAGGTGAAGTATAAGGGGA AGTCGATCGCGGATGTTTTGAATATGAGCGTGGACGAGGCCCTCGAACTGTTCGAGAACGTGCCGTCGATCAGTGCAAAG CTCCAGACGCTTGCCGATGTGGGTCTCGGGTATATCAAGCTCGGGCAGAGTTCGACGACGCTGTCCGGCGGCGAGGCCCA GCGTATCAAACTGACGAGGGAGCTTGCGAAGCGGGCGACGGGGAAGACCGTGTATCTCTTAGATGAGCCGACGACTGGTC TCCATTTCCATGACGTGAAGAAGCTTATCGGGGTTCTGGACAGTCTGGTCGGGAAAGGGAATTCGGTTGTGGTGATCGAG CATAATCTGGATGTTATCAAGTCGGCGGATTATCTGATCGATCTCGGCCCTGAGGGCGGGAATGCCGGCGGCGAGATCAT TGCCGAAGGAACGCCGGAGGAGGTAGCGAAGGTGAAGCGGAGTTATACGGGGCAGTTTTTACAGAGGATGCTGTAA
Upstream 100 bases:
>100_bases CCCTCGGGCTTGCCCACCCCGTGGTCATGAAGCCCGAGACCGGCGACAAACTCCCCGGTTCTAAAACATAATAACCCCCT GCCGCAAACATGTACCCCGC
Downstream 100 bases:
>100_bases GAATTATCTGTTCTTTTTTTGGGGCGGGTTGGACCCGAGCGAAGCGAAGGGGACGACCTCAGCGGAGCAAATCTTTGATT TGCGACTGTGGGCTTCGGTT
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 931; Mature: 931
Protein sequence:
>931_residues MKNLIVKGARQHNLQNINIELPRDKLIVVTGVSGSGKSTLAFDTIYAEGHRRYVESLSAYARQFLGLMSKPDVDSIEGLS PAISIEQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPIHHVKIESRTPGQIADSIQKEYPETMVTILAPIIRKKKG TYEQLFRDLHADGFARVRVDGEIFRTDDEIKLGRYIMHNIDVVIDRVETSDRSRLTEAIESALKHAEDGLVYANAGETDS VYSARMACPVCGLSFEELQPRMFSFNSPFGACPTCNGLGFQMVFDPDLIIPDKSLSLADGAVAVYKNFLDGFRVQYLDAV AKHLGFTLMTPVSEFTKEQYDGLMYGVNQDMKFRHTSKNAEWAYHGTWEGLLPQTERLYKETKSEYRKEELEKFMRILPC PTCHGKRLKDHVLAVKVGGQSIADVADMSIDAALEFFESLPLSEKEEEIARLILREIKSRLNFLKSVGLGYLTLSRSAGS LSGGEAQRIRLATQIGSNLMGVLYILDEPSIGLHQRDNQKLIQTLQKLRDLGNTLIVVEHDEDTIRAADYVVDIGPGAGV HGGKVVAEGTPDMIETFPESLTGKYLSGELSIPVPEKRRPAKRFIRLNGCTENNLKNIDAAIPLGTLTVVTGVSGSGKST LIYDTLYQALMKELYKSKVTPGAYKELIFESEIDKVIVIDQSPIGRTPRSNPATYTKVFDDIRKLFAETKEAKLRGYGPG RFSFNIKGGRCEACSGDGVMKIEMNFLPDVYIECEECKGTRYNEETLEVKYKGKSIADVLNMSVDEALELFENVPSISAK LQTLADVGLGYIKLGQSSTTLSGGEAQRIKLTRELAKRATGKTVYLLDEPTTGLHFHDVKKLIGVLDSLVGKGNSVVVIE HNLDVIKSADYLIDLGPEGGNAGGEIIAEGTPEEVAKVKRSYTGQFLQRML
Sequences:
>Translated_931_residues MKNLIVKGARQHNLQNINIELPRDKLIVVTGVSGSGKSTLAFDTIYAEGHRRYVESLSAYARQFLGLMSKPDVDSIEGLS PAISIEQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPIHHVKIESRTPGQIADSIQKEYPETMVTILAPIIRKKKG TYEQLFRDLHADGFARVRVDGEIFRTDDEIKLGRYIMHNIDVVIDRVETSDRSRLTEAIESALKHAEDGLVYANAGETDS VYSARMACPVCGLSFEELQPRMFSFNSPFGACPTCNGLGFQMVFDPDLIIPDKSLSLADGAVAVYKNFLDGFRVQYLDAV AKHLGFTLMTPVSEFTKEQYDGLMYGVNQDMKFRHTSKNAEWAYHGTWEGLLPQTERLYKETKSEYRKEELEKFMRILPC PTCHGKRLKDHVLAVKVGGQSIADVADMSIDAALEFFESLPLSEKEEEIARLILREIKSRLNFLKSVGLGYLTLSRSAGS LSGGEAQRIRLATQIGSNLMGVLYILDEPSIGLHQRDNQKLIQTLQKLRDLGNTLIVVEHDEDTIRAADYVVDIGPGAGV HGGKVVAEGTPDMIETFPESLTGKYLSGELSIPVPEKRRPAKRFIRLNGCTENNLKNIDAAIPLGTLTVVTGVSGSGKST LIYDTLYQALMKELYKSKVTPGAYKELIFESEIDKVIVIDQSPIGRTPRSNPATYTKVFDDIRKLFAETKEAKLRGYGPG RFSFNIKGGRCEACSGDGVMKIEMNFLPDVYIECEECKGTRYNEETLEVKYKGKSIADVLNMSVDEALELFENVPSISAK LQTLADVGLGYIKLGQSSTTLSGGEAQRIKLTRELAKRATGKTVYLLDEPTTGLHFHDVKKLIGVLDSLVGKGNSVVVIE HNLDVIKSADYLIDLGPEGGNAGGEIIAEGTPEEVAKVKRSYTGQFLQRML >Mature_931_residues MKNLIVKGARQHNLQNINIELPRDKLIVVTGVSGSGKSTLAFDTIYAEGHRRYVESLSAYARQFLGLMSKPDVDSIEGLS PAISIEQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPIHHVKIESRTPGQIADSIQKEYPETMVTILAPIIRKKKG TYEQLFRDLHADGFARVRVDGEIFRTDDEIKLGRYIMHNIDVVIDRVETSDRSRLTEAIESALKHAEDGLVYANAGETDS VYSARMACPVCGLSFEELQPRMFSFNSPFGACPTCNGLGFQMVFDPDLIIPDKSLSLADGAVAVYKNFLDGFRVQYLDAV AKHLGFTLMTPVSEFTKEQYDGLMYGVNQDMKFRHTSKNAEWAYHGTWEGLLPQTERLYKETKSEYRKEELEKFMRILPC PTCHGKRLKDHVLAVKVGGQSIADVADMSIDAALEFFESLPLSEKEEEIARLILREIKSRLNFLKSVGLGYLTLSRSAGS LSGGEAQRIRLATQIGSNLMGVLYILDEPSIGLHQRDNQKLIQTLQKLRDLGNTLIVVEHDEDTIRAADYVVDIGPGAGV HGGKVVAEGTPDMIETFPESLTGKYLSGELSIPVPEKRRPAKRFIRLNGCTENNLKNIDAAIPLGTLTVVTGVSGSGKST LIYDTLYQALMKELYKSKVTPGAYKELIFESEIDKVIVIDQSPIGRTPRSNPATYTKVFDDIRKLFAETKEAKLRGYGPG RFSFNIKGGRCEACSGDGVMKIEMNFLPDVYIECEECKGTRYNEETLEVKYKGKSIADVLNMSVDEALELFENVPSISAK LQTLADVGLGYIKLGQSSTTLSGGEAQRIKLTRELAKRATGKTVYLLDEPTTGLHFHDVKKLIGVLDSLVGKGNSVVVIE HNLDVIKSADYLIDLGPEGGNAGGEIIAEGTPEEVAKVKRSYTGQFLQRML
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=943, Percent_Identity=55.6733828207847, Blast_Score=1038, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 103133; Mature: 103133
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNLIVKGARQHNLQNINIELPRDKLIVVTGVSGSGKSTLAFDTIYAEGHRRYVESLSAY CCCCEECCHHHCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHH ARQFLGLMSKPDVDSIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC HHHHHHHCCCCCCCHHCCCCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC PIHHVKIESRTPGQIADSIQKEYPETMVTILAPIIRKKKGTYEQLFRDLHADGFARVRVD CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEC GEIFRTDDEIKLGRYIMHNIDVVIDRVETSDRSRLTEAIESALKHAEDGLVYANAGETDS CEEEECCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCH VYSARMACPVCGLSFEELQPRMFSFNSPFGACPTCNGLGFQMVFDPDLIIPDKSLSLADG HHHHHHHCCCCCCCHHHCCCHHEECCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCH AVAVYKNFLDGFRVQYLDAVAKHLGFTLMTPVSEFTKEQYDGLMYGVNQDMKFRHTSKNA HHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEECCCCCEEEECCCCC EWAYHGTWEGLLPQTERLYKETKSEYRKEELEKFMRILPCPTCHGKRLKDHVLAVKVGGQ CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC SIADVADMSIDAALEFFESLPLSEKEEEIARLILREIKSRLNFLKSVGLGYLTLSRSAGS HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC LSGGEAQRIRLATQIGSNLMGVLYILDEPSIGLHQRDNQKLIQTLQKLRDLGNTLIVVEH CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC DEDTIRAADYVVDIGPGAGVHGGKVVAEGTPDMIETFPESLTGKYLSGELSIPVPEKRRP CCCCEEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCCEECCEECCCCCCCCCC AKRFIRLNGCTENNLKNIDAAIPLGTLTVVTGVSGSGKSTLIYDTLYQALMKELYKSKVT HHHEEEECCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHCCC PGAYKELIFESEIDKVIVIDQSPIGRTPRSNPATYTKVFDDIRKLFAETKEAKLRGYGPG CHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCC RFSFNIKGGRCEACSGDGVMKIEMNFLPDVYIECEECKGTRYNEETLEVKYKGKSIADVL EEEEEECCCEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHH NMSVDEALELFENVPSISAKLQTLADVGLGYIKLGQSSTTLSGGEAQRIKLTRELAKRAT CCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCC GKTVYLLDEPTTGLHFHDVKKLIGVLDSLVGKGNSVVVIEHNLDVIKSADYLIDLGPEGG CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCEEEEECCCCC NAGGEIIAEGTPEEVAKVKRSYTGQFLQRML CCCCCEEECCCHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MKNLIVKGARQHNLQNINIELPRDKLIVVTGVSGSGKSTLAFDTIYAEGHRRYVESLSAY CCCCEECCHHHCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHH ARQFLGLMSKPDVDSIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC HHHHHHHCCCCCCCHHCCCCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC PIHHVKIESRTPGQIADSIQKEYPETMVTILAPIIRKKKGTYEQLFRDLHADGFARVRVD CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEC GEIFRTDDEIKLGRYIMHNIDVVIDRVETSDRSRLTEAIESALKHAEDGLVYANAGETDS CEEEECCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCH VYSARMACPVCGLSFEELQPRMFSFNSPFGACPTCNGLGFQMVFDPDLIIPDKSLSLADG HHHHHHHCCCCCCCHHHCCCHHEECCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCH AVAVYKNFLDGFRVQYLDAVAKHLGFTLMTPVSEFTKEQYDGLMYGVNQDMKFRHTSKNA HHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCEEEECCCCCEEEECCCCC EWAYHGTWEGLLPQTERLYKETKSEYRKEELEKFMRILPCPTCHGKRLKDHVLAVKVGGQ CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC SIADVADMSIDAALEFFESLPLSEKEEEIARLILREIKSRLNFLKSVGLGYLTLSRSAGS HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC LSGGEAQRIRLATQIGSNLMGVLYILDEPSIGLHQRDNQKLIQTLQKLRDLGNTLIVVEH CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC DEDTIRAADYVVDIGPGAGVHGGKVVAEGTPDMIETFPESLTGKYLSGELSIPVPEKRRP CCCCEEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCCEECCEECCCCCCCCCC AKRFIRLNGCTENNLKNIDAAIPLGTLTVVTGVSGSGKSTLIYDTLYQALMKELYKSKVT HHHEEEECCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHCCC PGAYKELIFESEIDKVIVIDQSPIGRTPRSNPATYTKVFDDIRKLFAETKEAKLRGYGPG CHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCC RFSFNIKGGRCEACSGDGVMKIEMNFLPDVYIECEECKGTRYNEETLEVKYKGKSIADVL EEEEEECCCEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHH NMSVDEALELFENVPSISAKLQTLADVGLGYIKLGQSSTTLSGGEAQRIKLTRELAKRAT CCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCC GKTVYLLDEPTTGLHFHDVKKLIGVLDSLVGKGNSVVVIEHNLDVIKSADYLIDLGPEGG CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCEEEEECCCCC NAGGEIIAEGTPEEVAKVKRSYTGQFLQRML CCCCCEEECCCHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11792842 [H]