| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485798
Identifier: 124485798
GI number: 124485798
Start: 974672
End: 975409
Strand: Reverse
Name: 124485798
Synonym: Mlab_0977
Alternate gene names: NA
Gene position: 975409-974672 (Counterclockwise)
Preceding gene: 124485799
Following gene: 124485797
Centisome position: 54.04
GC content: 55.15
Gene sequence:
>738_bases ATGGCTGCGACCCTCTCCCTCGCATTTTTCGACAGTCCGGTCTGGAACAACCTGGCCCTGATCCTCGGCCAGCTTCTTCT GATCTTCATAGCCTTCTGGCTGATCTTCTCCATTCTGATGGCGATCTTAATCGTCATCTCGATCCACCGGAAACAGATGT ACTTCCCGCGGCTTCTCAGACCGTTCTTTACGATCATGGAAGGCACGGTCAAGATCGTCTGTCTCCTCCTCGGCGTCGAC GGAAAAGAGCTGATGGAGTTTCTGATCAGAATCGACAACGAGATGAACTACTCCAACTTCGCGAAAACCCCGGTCGAAGA CCGTGTCGTCTTCTTTCCCCAGTGTCTCCGTGCTCACGATTGCCCGGCCCGTCTGACCCCCGACGGACTCAAATGCGTTT CCTGCGGGCGCTGCGGGCTTGGACGGGCGGTCCCTGCTCTCAACGAAGCAGGATACAAGACCTTCATCATCCCGGGCTCG ACCTTCATTAAAAGGATGGTGAAAAAATATAAGCCGAAGGCAATGATCGGCGTCGGCTGCATGATGGAGGTCAAGGAAGG TCTGCAGATGGGCCGAAAGATCTCCATGACGACGATCGGATTCGTTACCAAGACGGACGGATGCGTGGAAACGACCATGG ACTACGAAGAGCTCATGGAAGTTGCCTCCCTCGGGCTTGCCCACCCCGTGGTCATGAAGCCCGAGACCGGCGACAAACTC CCCGGTTCTAAAACATAA
Upstream 100 bases:
>100_bases CAACTACGCCTTCGACGCGACGCCGCTGGATCTAGTTACCGCCATTATAACCGAAAAGGGTGTCCTGTATCCCCCGTATG ATTTCCAGGACATGAAATAA
Downstream 100 bases:
>100_bases TAACCCCCTGCCGCAAACATGTACCCCGCATGAAAAACCTGATCGTGAAGGGTGCCAGACAGCACAACCTTCAGAATATC AATATAGAACTCCCGCGTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MAATLSLAFFDSPVWNNLALILGQLLLIFIAFWLIFSILMAILIVISIHRKQMYFPRLLRPFFTIMEGTVKIVCLLLGVD GKELMEFLIRIDNEMNYSNFAKTPVEDRVVFFPQCLRAHDCPARLTPDGLKCVSCGRCGLGRAVPALNEAGYKTFIIPGS TFIKRMVKKYKPKAMIGVGCMMEVKEGLQMGRKISMTTIGFVTKTDGCVETTMDYEELMEVASLGLAHPVVMKPETGDKL PGSKT
Sequences:
>Translated_245_residues MAATLSLAFFDSPVWNNLALILGQLLLIFIAFWLIFSILMAILIVISIHRKQMYFPRLLRPFFTIMEGTVKIVCLLLGVD GKELMEFLIRIDNEMNYSNFAKTPVEDRVVFFPQCLRAHDCPARLTPDGLKCVSCGRCGLGRAVPALNEAGYKTFIIPGS TFIKRMVKKYKPKAMIGVGCMMEVKEGLQMGRKISMTTIGFVTKTDGCVETTMDYEELMEVASLGLAHPVVMKPETGDKL PGSKT >Mature_244_residues AATLSLAFFDSPVWNNLALILGQLLLIFIAFWLIFSILMAILIVISIHRKQMYFPRLLRPFFTIMEGTVKIVCLLLGVDG KELMEFLIRIDNEMNYSNFAKTPVEDRVVFFPQCLRAHDCPARLTPDGLKCVSCGRCGLGRAVPALNEAGYKTFIIPGST FIKRMVKKYKPKAMIGVGCMMEVKEGLQMGRKISMTTIGFVTKTDGCVETTMDYEELMEVASLGLAHPVVMKPETGDKLP GSKT
Specific function: Unknown
COG id: COG1852
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002829 - InterPro: IPR017446 [H]
Pfam domain/function: PF01976 DUF116 [H]
EC number: NA
Molecular weight: Translated: 27330; Mature: 27199
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 6.1 %Met (Translated Protein) 9.4 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 5.7 %Met (Mature Protein) 9.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATLSLAFFDSPVWNNLALILGQLLLIFIAFWLIFSILMAILIVISIHRKQMYFPRLLR CCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PFFTIMEGTVKIVCLLLGVDGKELMEFLIRIDNEMNYSNFAKTPVEDRVVFFPQCLRAHD HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEHHHHHHCCCC CPARLTPDGLKCVSCGRCGLGRAVPALNEAGYKTFIIPGSTFIKRMVKKYKPKAMIGVGC CCCCCCCCCCCEECCCCCCCCCCCCCHHCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHH MMEVKEGLQMGRKISMTTIGFVTKTDGCVETTMDYEELMEVASLGLAHPVVMKPETGDKL HHHHHHHHHHCCEEEHHEEEEEECCCCHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCC PGSKT CCCCC >Mature Secondary Structure AATLSLAFFDSPVWNNLALILGQLLLIFIAFWLIFSILMAILIVISIHRKQMYFPRLLR CCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PFFTIMEGTVKIVCLLLGVDGKELMEFLIRIDNEMNYSNFAKTPVEDRVVFFPQCLRAHD HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEHHHHHHCCCC CPARLTPDGLKCVSCGRCGLGRAVPALNEAGYKTFIIPGSTFIKRMVKKYKPKAMIGVGC CCCCCCCCCCCEECCCCCCCCCCCCCHHCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHH MMEVKEGLQMGRKISMTTIGFVTKTDGCVETTMDYEELMEVASLGLAHPVVMKPETGDKL HHHHHHHHHHCCEEEHHEEEEEECCCCHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCC PGSKT CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]