| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485717
Identifier: 124485717
GI number: 124485717
Start: 884572
End: 886191
Strand: Reverse
Name: 124485717
Synonym: Mlab_0895
Alternate gene names: NA
Gene position: 886191-884572 (Counterclockwise)
Preceding gene: 124485718
Following gene: 124485716
Centisome position: 49.1
GC content: 30.43
Gene sequence:
>1620_bases TTGAGTGTTTATGTCTGGAGAAATAATATGATGATGAAATTGAGTCATAATCAGCAATTCAAAATAGGTATAATATTATA TCTATTTCTAGTTGTATACTCCTTCCTCTACACCTATGGGAATTCTGATGCTTTTCTTCCACAAAATATTGTTAGTTTTC TAGACTTTGTATATTATGGTAATGGATTTCTTTCAACTGTGATTGGTTATCATTCTTTTGGAGCAATGATTTGTCTGATT CTTGGGATTTCCCCTGATTCTCTATTAACTCTACCCATATCTATCATCCCATTATCAGCAATTGTGTGTCTTATATTGTA TAGGATATCCAAAAATATTATTTTAGCAACAATATTAATGGGATGTTTATTTTGCTCTATTTCAACTTCAGATTATAACG TGTATTGGATCCATACCATTGGTATGATTCTCTACTTCCTTATAATTTATCTTATATTTATGGACTTAGAGAATAAAATA GGGGAAAATTCATATAAAAATTCAATATTCATCTGTTTAATAATTGTTCTTCTCTCATTAAATTATATCTCATACAATTA TATGGCAATGGTATTTTCTCTTATATTTTGTTTTACAGCGGTAGTGCTAATTCAGTTCATCCGTGTGAAATTCTATAATT TGGATATTCGCTATATTATTCCAAAATCACATATACTCCTCCTCATGATCATTTCAGGCCTTATGATATTCGAGTTAAAT ACGTATTATTATATATTTTATAATGCTATCGGCACTATGAATGAATTCGGTATTTCAAGTATTGATAAATTTCTAATCTA TGCTTATCAATTTCTTGGAGTTAGCGAGTCCGCTTCTATTTCTCCATTAGCACCATATTACTTCACATCAACATATGAAA TCGCTATTCTTCAGATTTTACGTTTTACTACCTGTGCTTTAGTCATTATTATTTATGGTCATTGGCTGTTAAAAATATAT TTAAGTAAAAATAAGACAATAGACTCAATTGATATTATTCTTATAACAATATTGCTGGGAATCATTATATTTATTTTGAC ACGAATAATTCTAGTTGTAAACTTAGGTGCTTTGTTGATGCTAATCACCCCTTCTGTCCTCATCTTTGCAAGGGTGTGCA CATTAAAACAAGATGTAAAGCTCAAAAAAATTGGGCAGGTGCTTGCGACGATATTTATTATTTTGACTGTTGTGTTGATA GCATTTACATTTGTAACTAACCTAGATGAACCAAGTAAATTTGAATCATACCCGCAAATATCTGAAATCGGATTGTGGTC TTATGTATATTCAACACAACCTATTTCTTCAGATGTGTATACGACAGGTGCAATTGGTTTGGCAATTATAACTAAAAATA ATCCAATCCGTATTGGATTAATACGAGATAGTTACAGTGTTTTCACGGATGATTGTGATATTCTTCCTTTGCTAAAGGGA AATTTAACGCCTGTAAATAAGGATATGGTTGTTAATTGGGGATTGCCACAGTTATCTGTTTCAAATAAGGATTGGGTTAC TTTAATTCCTTGGAGAGTATATAAGCAAGAAATTATCTATAATTCTAACTATAATATTGTGTGTTCAAGTGGAGTAATTG ATTATTTGGTCCCATCATAG
Upstream 100 bases:
>100_bases GCAAGGAGCGGGCTCAGATGTTTGATTTGAATAGAGGAATTCAAAAATATACCGATATGATTGATAAAATCAATAATTTA AATAGAAACTTTAAGAAAAA
Downstream 100 bases:
>100_bases GTTGTGTTTTGCCCACCTAATTCATTGAAATATTGAAAATATGAAACGTTTAGCATGTCCGAGAAAACACTTGATATCCA ATTTCAAAAGCAATTACCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MSVYVWRNNMMMKLSHNQQFKIGIILYLFLVVYSFLYTYGNSDAFLPQNIVSFLDFVYYGNGFLSTVIGYHSFGAMICLI LGISPDSLLTLPISIIPLSAIVCLILYRISKNIILATILMGCLFCSISTSDYNVYWIHTIGMILYFLIIYLIFMDLENKI GENSYKNSIFICLIIVLLSLNYISYNYMAMVFSLIFCFTAVVLIQFIRVKFYNLDIRYIIPKSHILLLMIISGLMIFELN TYYYIFYNAIGTMNEFGISSIDKFLIYAYQFLGVSESASISPLAPYYFTSTYEIAILQILRFTTCALVIIIYGHWLLKIY LSKNKTIDSIDIILITILLGIIIFILTRIILVVNLGALLMLITPSVLIFARVCTLKQDVKLKKIGQVLATIFIILTVVLI AFTFVTNLDEPSKFESYPQISEIGLWSYVYSTQPISSDVYTTGAIGLAIITKNNPIRIGLIRDSYSVFTDDCDILPLLKG NLTPVNKDMVVNWGLPQLSVSNKDWVTLIPWRVYKQEIIYNSNYNIVCSSGVIDYLVPS
Sequences:
>Translated_539_residues MSVYVWRNNMMMKLSHNQQFKIGIILYLFLVVYSFLYTYGNSDAFLPQNIVSFLDFVYYGNGFLSTVIGYHSFGAMICLI LGISPDSLLTLPISIIPLSAIVCLILYRISKNIILATILMGCLFCSISTSDYNVYWIHTIGMILYFLIIYLIFMDLENKI GENSYKNSIFICLIIVLLSLNYISYNYMAMVFSLIFCFTAVVLIQFIRVKFYNLDIRYIIPKSHILLLMIISGLMIFELN TYYYIFYNAIGTMNEFGISSIDKFLIYAYQFLGVSESASISPLAPYYFTSTYEIAILQILRFTTCALVIIIYGHWLLKIY LSKNKTIDSIDIILITILLGIIIFILTRIILVVNLGALLMLITPSVLIFARVCTLKQDVKLKKIGQVLATIFIILTVVLI AFTFVTNLDEPSKFESYPQISEIGLWSYVYSTQPISSDVYTTGAIGLAIITKNNPIRIGLIRDSYSVFTDDCDILPLLKG NLTPVNKDMVVNWGLPQLSVSNKDWVTLIPWRVYKQEIIYNSNYNIVCSSGVIDYLVPS >Mature_538_residues SVYVWRNNMMMKLSHNQQFKIGIILYLFLVVYSFLYTYGNSDAFLPQNIVSFLDFVYYGNGFLSTVIGYHSFGAMICLIL GISPDSLLTLPISIIPLSAIVCLILYRISKNIILATILMGCLFCSISTSDYNVYWIHTIGMILYFLIIYLIFMDLENKIG ENSYKNSIFICLIIVLLSLNYISYNYMAMVFSLIFCFTAVVLIQFIRVKFYNLDIRYIIPKSHILLLMIISGLMIFELNT YYYIFYNAIGTMNEFGISSIDKFLIYAYQFLGVSESASISPLAPYYFTSTYEIAILQILRFTTCALVIIIYGHWLLKIYL SKNKTIDSIDIILITILLGIIIFILTRIILVVNLGALLMLITPSVLIFARVCTLKQDVKLKKIGQVLATIFIILTVVLIA FTFVTNLDEPSKFESYPQISEIGLWSYVYSTQPISSDVYTTGAIGLAIITKNNPIRIGLIRDSYSVFTDDCDILPLLKGN LTPVNKDMVVNWGLPQLSVSNKDWVTLIPWRVYKQEIIYNSNYNIVCSSGVIDYLVPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61440; Mature: 61309
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVYVWRNNMMMKLSHNQQFKIGIILYLFLVVYSFLYTYGNSDAFLPQNIVSFLDFVYYG CEEEEEECCEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC NGFLSTVIGYHSFGAMICLILGISPDSLLTLPISIIPLSAIVCLILYRISKNIILATILM CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHH GCLFCSISTSDYNVYWIHTIGMILYFLIIYLIFMDLENKIGENSYKNSIFICLIIVLLSL HHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH NYISYNYMAMVFSLIFCFTAVVLIQFIRVKFYNLDIRYIIPKSHILLLMIISGLMIFELN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHCHHEEEEC TYYYIFYNAIGTMNEFGISSIDKFLIYAYQFLGVSESASISPLAPYYFTSTYEIAILQIL CEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHH RFTTCALVIIIYGHWLLKIYLSKNKTIDSIDIILITILLGIIIFILTRIILVVNLGALLM HHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LITPSVLIFARVCTLKQDVKLKKIGQVLATIFIILTVVLIAFTFVTNLDEPSKFESYPQI HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCH SEIGLWSYVYSTQPISSDVYTTGAIGLAIITKNNPIRIGLIRDSYSVFTDDCDILPLLKG HHCCHHHHEEECCCCCCCCEECCCEEEEEEECCCCEEEEEEECCCCEECCCCCEEECCCC NLTPVNKDMVVNWGLPQLSVSNKDWVTLIPWRVYKQEIIYNSNYNIVCSSGVIDYLVPS CCCCCCCCEEEECCCCCCEECCCCCEEEECHHHHHHHHEECCCCCEEECCCCCHHCCCC >Mature Secondary Structure SVYVWRNNMMMKLSHNQQFKIGIILYLFLVVYSFLYTYGNSDAFLPQNIVSFLDFVYYG EEEEEECCEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC NGFLSTVIGYHSFGAMICLILGISPDSLLTLPISIIPLSAIVCLILYRISKNIILATILM CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHH GCLFCSISTSDYNVYWIHTIGMILYFLIIYLIFMDLENKIGENSYKNSIFICLIIVLLSL HHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH NYISYNYMAMVFSLIFCFTAVVLIQFIRVKFYNLDIRYIIPKSHILLLMIISGLMIFELN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHCHHEEEEC TYYYIFYNAIGTMNEFGISSIDKFLIYAYQFLGVSESASISPLAPYYFTSTYEIAILQIL CEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHH RFTTCALVIIIYGHWLLKIYLSKNKTIDSIDIILITILLGIIIFILTRIILVVNLGALLM HHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LITPSVLIFARVCTLKQDVKLKKIGQVLATIFIILTVVLIAFTFVTNLDEPSKFESYPQI HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCH SEIGLWSYVYSTQPISSDVYTTGAIGLAIITKNNPIRIGLIRDSYSVFTDDCDILPLLKG HHCCHHHHEEECCCCCCCCEECCCEEEEEEECCCCEEEEEEECCCCEECCCCCEEECCCC NLTPVNKDMVVNWGLPQLSVSNKDWVTLIPWRVYKQEIIYNSNYNIVCSSGVIDYLVPS CCCCCCCCEEEECCCCCCEECCCCCEEEECHHHHHHHHEECCCCCEEECCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA