Click here to switch to the map view.

The map label for this gene is 124484976

Identifier: 124484976

GI number: 124484976

Start: 135071

End: 135568

Strand: Reverse

Name: 124484976

Synonym: Mlab_0148

Alternate gene names: NA

Gene position: 135568-135071 (Counterclockwise)

Preceding gene: 124484981

Following gene: 124484975

Centisome position: 7.51

GC content: 51.0

Gene sequence:

>498_bases
ATGGCAGACCTTATCATTAAAAAACGCCACGCCATCAAAAAAAGTCAGCTTGCAGCTTTGATGACAAAACTTACCGAGAA
TATCGGAGAAGATGCAGCTTTGTACAATGCCCCCATGATCGAGATCGCGGAGACAGCATCCAAATTCAATATCTACATCA
TCGATAAAAAACCGCTTATCATGGAGAAGGACGACTGGGCGTTCCCCACGCTTCGGGGGGCAGTCTCCCGTCCGTTTTCT
GGGAGAAGGATCGTGGTCGATATGGGGGCGATCCCCTATATGATCAACGGCGCAGACGTTATGCGTCCCGGAATCGTATC
GGTCACGGACGACGTAAAGGCCGGTCAGCCGGCGCTCGCCGTTGACGAAAGTCACGACAAACCCCTCGCGGTTGTACTTC
CACTGTATGATGCGAAAGATATCATCGCGCTTGAGAAGGGAAAGGCGGCGAAAAATCTGCATTACATCGGTGACGAGCTC
TGGAATCTGGAGATCTAA

Upstream 100 bases:

>100_bases
CAAAGTCCGAATATCGGGCATGTATTATTGGAGAAAATACATGGTAATGCATCCGTCACGGAGTATATTTAATTCCACGG
GCCAAATAACTGTATAACAC

Downstream 100 bases:

>100_bases
GCACCTCACACAGATAGAATTAAATAAGCAACAACTAAACTATTTTTCATATGGGATTTCTTGACGGAGTATTTGGCTCA
AAGGATAAAGCAACAGACGA

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MADLIIKKRHAIKKSQLAALMTKLTENIGEDAALYNAPMIEIAETASKFNIYIIDKKPLIMEKDDWAFPTLRGAVSRPFS
GRRIVVDMGAIPYMINGADVMRPGIVSVTDDVKAGQPALAVDESHDKPLAVVLPLYDAKDIIALEKGKAAKNLHYIGDEL
WNLEI

Sequences:

>Translated_165_residues
MADLIIKKRHAIKKSQLAALMTKLTENIGEDAALYNAPMIEIAETASKFNIYIIDKKPLIMEKDDWAFPTLRGAVSRPFS
GRRIVVDMGAIPYMINGADVMRPGIVSVTDDVKAGQPALAVDESHDKPLAVVLPLYDAKDIIALEKGKAAKNLHYIGDEL
WNLEI
>Mature_164_residues
ADLIIKKRHAIKKSQLAALMTKLTENIGEDAALYNAPMIEIAETASKFNIYIIDKKPLIMEKDDWAFPTLRGAVSRPFSG
RRIVVDMGAIPYMINGADVMRPGIVSVTDDVKAGQPALAVDESHDKPLAVVLPLYDAKDIIALEKGKAAKNLHYIGDELW
NLEI

Specific function: Unknown

COG id: COG2016

COG function: function code J; Predicted RNA-binding protein (contains PUA domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320844, Length=171, Percent_Identity=25.1461988304094, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022430
- InterPro:   IPR015266
- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR016437
- InterPro:   IPR004521 [H]

Pfam domain/function: PF01472 PUA [H]

EC number: NA

Molecular weight: Translated: 18185; Mature: 18054

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLIIKKRHAIKKSQLAALMTKLTENIGEDAALYNAPMIEIAETASKFNIYIIDKKPLI
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHEEECCCCEEEEEEECCCCEE
MEKDDWAFPTLRGAVSRPFSGRRIVVDMGAIPYMINGADVMRPGIVSVTDDVKAGQPALA
EECCCCCCCHHHHHHCCCCCCCEEEEECCCCCEEECCCHHHCCCEEEEECCCCCCCCEEE
VDESHDKPLAVVLPLYDAKDIIALEKGKAAKNLHYIGDELWNLEI
ECCCCCCCEEEEEECCCCCCEEEECCCCCCCHHHHCCCEEEECCC
>Mature Secondary Structure 
ADLIIKKRHAIKKSQLAALMTKLTENIGEDAALYNAPMIEIAETASKFNIYIIDKKPLI
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHEEECCCCEEEEEEECCCCEE
MEKDDWAFPTLRGAVSRPFSGRRIVVDMGAIPYMINGADVMRPGIVSVTDDVKAGQPALA
EECCCCCCCHHHHHHCCCCCCCEEEEECCCCCEEECCCHHHCCCEEEEECCCCCCCCEEE
VDESHDKPLAVVLPLYDAKDIIALEKGKAAKNLHYIGDELWNLEI
ECCCCCCCEEEEEECCCCCCEEEECCCCCCCHHHHCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]