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The map label for this gene is frhD [H]

Identifier: 124484843

GI number: 124484843

Start: 13919

End: 14401

Strand: Reverse

Name: frhD [H]

Synonym: Mlab_0014

Alternate gene names: 124484843

Gene position: 14401-13919 (Counterclockwise)

Preceding gene: 124484844

Following gene: 124484842

Centisome position: 0.8

GC content: 48.65

Gene sequence:

>483_bases
ATGGATGGACTGTTTCCAGAAATAATAATCGCCGGTGTCGGTAACGAACTCTTTGGCGACGACGGATTTGGTCCCGTTGT
GATCAGAGCTTTAGCTGACTACGAACTTCCCGACAATGTAAAAGCAATGGATGTAGGCCTTGGCGGCCCTCACCTCATCT
TTTCGATGCTGGATCCAGAAGTCACAAAAAAACTGATCATTGTGGATGCAATGGACTTCGGGGGAAAACCCGGAGACGTC
ACGAAAATCCCCGCCGATCTTCTTCCTGAAGGCAGAGGAGAACGTTACATGGATGCCCATTCCGGAAATCTGCTCGATCC
GATCGGCAGACTGAAAGGAAAAATGGATATTGTTATTATCGGGTGCCAGCCCGGGTATATTCCTGCTCCGGATTCAGAGG
ACTTTGCCCTCGAATTAAGTCCGGAAGTCCAAGGAGCTGTTCCCAAAACTGTAACTGTCATCTTACAGGAATTAGAGAGC
TGA

Upstream 100 bases:

>100_bases
CCGTGCATACGACCCCTGTGTTTCCTGCGCAACCCACATGATTGTGCTGGATGAAAACAACAAGCTCGTTGCACAGAAGC
TCCTTGAGTAAGTATATACC

Downstream 100 bases:

>100_bases
AAAATGGGATTATTAGATAAACTCAAAGGCTTACTGTTCGGTAATGAGGCTGTCAGCGAGGGAAAACAGGACGCAAAGCC
TGGTGCAACACCAGCTGACA

Product: coenzyme F420-reducing hydrogenase, delta subunit

Products: reduced coenzyme F420

Alternate protein names: Putative coenzyme F420 hydrogenase-processing subunit [H]

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MDGLFPEIIIAGVGNELFGDDGFGPVVIRALADYELPDNVKAMDVGLGGPHLIFSMLDPEVTKKLIIVDAMDFGGKPGDV
TKIPADLLPEGRGERYMDAHSGNLLDPIGRLKGKMDIVIIGCQPGYIPAPDSEDFALELSPEVQGAVPKTVTVILQELES

Sequences:

>Translated_160_residues
MDGLFPEIIIAGVGNELFGDDGFGPVVIRALADYELPDNVKAMDVGLGGPHLIFSMLDPEVTKKLIIVDAMDFGGKPGDV
TKIPADLLPEGRGERYMDAHSGNLLDPIGRLKGKMDIVIIGCQPGYIPAPDSEDFALELSPEVQGAVPKTVTVILQELES
>Mature_160_residues
MDGLFPEIIIAGVGNELFGDDGFGPVVIRALADYELPDNVKAMDVGLGGPHLIFSMLDPEVTKKLIIVDAMDFGGKPGDV
TKIPADLLPEGRGERYMDAHSGNLLDPIGRLKGKMDIVIIGCQPGYIPAPDSEDFALELSPEVQGAVPKTVTVILQELES

Specific function: Protease Involved In The C-Terminal Processing Of Hyab, The Large Subunit Of Hydrogenase 1 (Potential). [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004411
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 1.12.98.1

Molecular weight: Translated: 17042; Mature: 17042

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGLFPEIIIAGVGNELFGDDGFGPVVIRALADYELPDNVKAMDVGLGGPHLIFSMLDPE
CCCCCCEEEEECCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCHH
VTKKLIIVDAMDFGGKPGDVTKIPADLLPEGRGERYMDAHSGNLLDPIGRLKGKMDIVII
HCEEEEEEEECCCCCCCCCCEECCHHHCCCCCCCCEEECCCCCCCCHHHHCCCCEEEEEE
GCQPGYIPAPDSEDFALELSPEVQGAVPKTVTVILQELES
ECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MDGLFPEIIIAGVGNELFGDDGFGPVVIRALADYELPDNVKAMDVGLGGPHLIFSMLDPE
CCCCCCEEEEECCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCHH
VTKKLIIVDAMDFGGKPGDVTKIPADLLPEGRGERYMDAHSGNLLDPIGRLKGKMDIVII
HCEEEEEEEECCCCCCCCCCEECCHHHCCCCCCCCEEECCCCCCCCHHHHCCCCEEEEEE
GCQPGYIPAPDSEDFALELSPEVQGAVPKTVTVILQELES
ECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2; coenzyme F420

Specific reaction: H2 + coenzyme F420 = reduced coenzyme F420

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2207102; 9371463 [H]