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The map label for this gene is ydfH [H]

Identifier: 124266206

GI number: 124266206

Start: 1076850

End: 1077548

Strand: Reverse

Name: ydfH [H]

Synonym: Mpe_A1013

Alternate gene names: 124266206

Gene position: 1077548-1076850 (Counterclockwise)

Preceding gene: 124266213

Following gene: 124266202

Centisome position: 26.64

GC content: 70.96

Gene sequence:

>699_bases
ATGTCCGAACCCACCCTCACGCTCGCCAGCACCGCCCTCGACCGCACGCCTGCCGACTCCGCGGCCGGCGCGCTGCCCGA
CCGCGCGCTGTACGAGCAGGTGGCCGAGGCGCTGCGCGCGCGCATCCTGTCGCACCGGCTCGCGCCGGGCAGCTGGATCG
ACGAGAAGGCGCTGGCGGTCGAGTACGGCATCAGCCGCACGCCCCTTCGCGAGGCGCTGAAGGTGCTGGCCGCGGAGGGC
CTGGTGACGATGAAGCTGCGCCGCGGCGCCTACGTCACCGAGGTGTCGGCGCGCGACCTGACCGAGGTGTTCCACCTGCT
CGCGCTGCTGGAGAGCGATGCCGCCGCCGCCGCCGCCAGCCGGCTCACGCCCGAGCAGCTGGCCGAACTGGAGACCCTGC
ACGAACAGCTCGAACGCAACCTCGGTGACCGCGACCGCTTCTTCGCCGCCAACGAGCGCTTCCACCTTCGCCTGCTCGAA
CTGGCCGACAACCGCTGGCGCGTGCAGATGGTCGCCGACCTGCGCAAGGTGATGAAGCTCAACCGCCACCACTCGCTGTT
CAAGCAGGGCCGGCTGGAGGCGTCGTTGAACGAACACCGCCAACTGATGGCCGCGCTGCGCGCGGGCGATGCCGAGCAGG
CTCAACAACTGATGCGCCGGCATCTCGCCAACGGTGAAGAGGCGGCGGCGATGCGCTGA

Upstream 100 bases:

>100_bases
AATCCGGGCTGGACGGCGAACTGAGGCGCGATCATAATTCAAAACTGAATTACAAACACGTCTTGTGTGCGCTGCACCAA
GACGACTGCCGCCGGGACCC

Downstream 100 bases:

>100_bases
GCCTGGCCCGCGCGCTGCTGACCAGGCCATCGGGTGAACGGCTCCGTTCGTGTCCCCCGGCGTCGGCCTCCCGGCCGACC
CCTCCTCCTCTACCTCACTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSEPTLTLASTALDRTPADSAAGALPDRALYEQVAEALRARILSHRLAPGSWIDEKALAVEYGISRTPLREALKVLAAEG
LVTMKLRRGAYVTEVSARDLTEVFHLLALLESDAAAAAASRLTPEQLAELETLHEQLERNLGDRDRFFAANERFHLRLLE
LADNRWRVQMVADLRKVMKLNRHHSLFKQGRLEASLNEHRQLMAALRAGDAEQAQQLMRRHLANGEEAAAMR

Sequences:

>Translated_232_residues
MSEPTLTLASTALDRTPADSAAGALPDRALYEQVAEALRARILSHRLAPGSWIDEKALAVEYGISRTPLREALKVLAAEG
LVTMKLRRGAYVTEVSARDLTEVFHLLALLESDAAAAAASRLTPEQLAELETLHEQLERNLGDRDRFFAANERFHLRLLE
LADNRWRVQMVADLRKVMKLNRHHSLFKQGRLEASLNEHRQLMAALRAGDAEQAQQLMRRHLANGEEAAAMR
>Mature_231_residues
SEPTLTLASTALDRTPADSAAGALPDRALYEQVAEALRARILSHRLAPGSWIDEKALAVEYGISRTPLREALKVLAAEGL
VTMKLRRGAYVTEVSARDLTEVFHLLALLESDAAAAAASRLTPEQLAELETLHEQLERNLGDRDRFFAANERFHLRLLEL
ADNRWRVQMVADLRKVMKLNRHHSLFKQGRLEASLNEHRQLMAALRAGDAEQAQQLMRRHLANGEEAAAMR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=208, Percent_Identity=29.3269230769231, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI87081914, Length=211, Percent_Identity=28.436018957346, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25945; Mature: 25814

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPTLTLASTALDRTPADSAAGALPDRALYEQVAEALRARILSHRLAPGSWIDEKALAV
CCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
EYGISRTPLREALKVLAAEGLVTMKLRRGAYVTEVSARDLTEVFHLLALLESDAAAAAAS
HHCCCCCCHHHHHHHHHHCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTPEQLAELETLHEQLERNLGDRDRFFAANERFHLRLLELADNRWRVQMVADLRKVMKL
CCCHHHHHHHHHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
NRHHSLFKQGRLEASLNEHRQLMAALRAGDAEQAQQLMRRHLANGEEAAAMR
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure 
SEPTLTLASTALDRTPADSAAGALPDRALYEQVAEALRARILSHRLAPGSWIDEKALAV
CCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
EYGISRTPLREALKVLAAEGLVTMKLRRGAYVTEVSARDLTEVFHLLALLESDAAAAAAS
HHCCCCCCHHHHHHHHHHCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTPEQLAELETLHEQLERNLGDRDRFFAANERFHLRLLELADNRWRVQMVADLRKVMKL
CCCHHHHHHHHHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
NRHHSLFKQGRLEASLNEHRQLMAALRAGDAEQAQQLMRRHLANGEEAAAMR
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]