| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is cpnA [H]
Identifier: 124266077
GI number: 124266077
Start: 925843
End: 926616
Strand: Direct
Name: cpnA [H]
Synonym: Mpe_A0884
Alternate gene names: 124266077
Gene position: 925843-926616 (Clockwise)
Preceding gene: 124266076
Following gene: 124266078
Centisome position: 22.89
GC content: 67.31
Gene sequence:
>774_bases ATGGGACGTGTGGACAACAAGGTGGCGCTGGTGACCGGTGGTGCCAAGGGCATCGGCCGGGCCAGCGCACTGATGCTGGC GCGCGAAGGTGCCCGCGTGGTGCTGACCGACGTGGAAGAGGCGCAGGGCAGCGCGGTGGCGAAGGAGATCGAGCGCGCCG GCGGCAAGGCGCTGTTCCTCACGCAGGACGTGACCGACGAGAGCCGCTGGGTCGAGGTGGTCGAGAAGGCCCGCGCGCAG TTCGGCGGCCTGAACATCGTCGTCAACAACGCCGGCATCGGCACCGCTGGCAGCGCCGAGGACGAGACGCTGGAGGCCTG GCGCCGCCTGATGTCCGTCAACCTCGACGGCGTCTTCCTCGGCACCAAGCACGCGATCCGGGCGATGAAGAACGGGCCCG GCACGGGCTCGATCATCAACATCTCGTCGATCGAGGGCATCGTCGCCGACCCCAAGCTCGCGTCCTACAACGCCAGCAAG GGCGGCGTGCGCATCTTCTCGAAGTCGGCGGCACTGCATTGCGCGCAGGCGGGCTACCGCATCCGGGTTAACACCATCCA TCCGGGCTACATCTGGACGCCGATGGTCGAAGGCTATCTGACCAGCCTCGGCGATGTCGAGGGTGGGCGCCAGGTCATCT CGAAGATGCACCCGATCGGGCGGATGGGTGAGCCCGACGACATCGCCTACGGTGTGCTCTACCTGGGCTCCGACGAGTCC TCGTTCATGACGGGCAGCGAGCTGGTCATCGACGGCGGCTACACCGCGCAATAG
Upstream 100 bases:
>100_bases CCGCGAAGTGGGTGACCGGCGCCGAGTTCGTGGTCGACGGCGGCTACACCGCGGTCTGACGGCGGCGCAGCGCACACGAC AACGGACAGGAGATCAGGAC
Downstream 100 bases:
>100_bases CCGCACACCCCCGTGAAAACGCTTGTGGGATGAACGCCGAGACGCTGCAGAAACTACCCGCTCGGGTGGGTCGCCGCGCC CCCCACTGCCTCTCTAATTG
Product: dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MGRVDNKVALVTGGAKGIGRASALMLAREGARVVLTDVEEAQGSAVAKEIERAGGKALFLTQDVTDESRWVEVVEKARAQ FGGLNIVVNNAGIGTAGSAEDETLEAWRRLMSVNLDGVFLGTKHAIRAMKNGPGTGSIINISSIEGIVADPKLASYNASK GGVRIFSKSAALHCAQAGYRIRVNTIHPGYIWTPMVEGYLTSLGDVEGGRQVISKMHPIGRMGEPDDIAYGVLYLGSDES SFMTGSELVIDGGYTAQ
Sequences:
>Translated_257_residues MGRVDNKVALVTGGAKGIGRASALMLAREGARVVLTDVEEAQGSAVAKEIERAGGKALFLTQDVTDESRWVEVVEKARAQ FGGLNIVVNNAGIGTAGSAEDETLEAWRRLMSVNLDGVFLGTKHAIRAMKNGPGTGSIINISSIEGIVADPKLASYNASK GGVRIFSKSAALHCAQAGYRIRVNTIHPGYIWTPMVEGYLTSLGDVEGGRQVISKMHPIGRMGEPDDIAYGVLYLGSDES SFMTGSELVIDGGYTAQ >Mature_256_residues GRVDNKVALVTGGAKGIGRASALMLAREGARVVLTDVEEAQGSAVAKEIERAGGKALFLTQDVTDESRWVEVVEKARAQF GGLNIVVNNAGIGTAGSAEDETLEAWRRLMSVNLDGVFLGTKHAIRAMKNGPGTGSIINISSIEGIVADPKLASYNASKG GVRIFSKSAALHCAQAGYRIRVNTIHPGYIWTPMVEGYLTSLGDVEGGRQVISKMHPIGRMGEPDDIAYGVLYLGSDESS FMTGSELVIDGGYTAQ
Specific function: Reduces cyclopentanol to cyclopentanone. The enzyme also shows considerable activity toward cyclohexanol [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=35.5555555555556, Blast_Score=127, Evalue=9e-30, Organism=Homo sapiens, GI15277342, Length=265, Percent_Identity=35.0943396226415, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=35.2, Blast_Score=117, Evalue=9e-27, Organism=Homo sapiens, GI66933014, Length=264, Percent_Identity=32.5757575757576, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI31542939, Length=244, Percent_Identity=33.1967213114754, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI32483357, Length=259, Percent_Identity=32.046332046332, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI4758504, Length=269, Percent_Identity=33.0855018587361, Blast_Score=100, Evalue=9e-22, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=28.7449392712551, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=31.8007662835249, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=36.9942196531792, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI83715985, Length=265, Percent_Identity=30.5660377358491, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=28.6274509803922, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=28.5140562248996, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI109715829, Length=255, Percent_Identity=27.0588235294118, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI40254986, Length=149, Percent_Identity=36.241610738255, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4504505, Length=195, Percent_Identity=36.4102564102564, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI20149619, Length=209, Percent_Identity=31.1004784688995, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4503817, Length=190, Percent_Identity=29.4736842105263, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI126723750, Length=261, Percent_Identity=28.3524904214559, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=31.9371727748691, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI142976729, Length=238, Percent_Identity=26.0504201680672, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=30.5699481865285, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI32455239, Length=164, Percent_Identity=31.7073170731707, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI5031765, Length=164, Percent_Identity=31.7073170731707, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI40807363, Length=200, Percent_Identity=29, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4503301, Length=252, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4504503, Length=205, Percent_Identity=31.7073170731707, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7706318, Length=198, Percent_Identity=29.7979797979798, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=35.8565737051793, Blast_Score=135, Evalue=2e-33, Organism=Escherichia coli, GI1789378, Length=256, Percent_Identity=36.71875, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=39.3574297188755, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=34.3629343629344, Blast_Score=131, Evalue=3e-32, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=32.4, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=30.9236947791165, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=28.7449392712551, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=29.5275590551181, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=31.0756972111554, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=29.3650793650794, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=30.5019305019305, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI2367365, Length=264, Percent_Identity=29.5454545454545, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1787526, Length=248, Percent_Identity=26.6129032258064, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=38.2470119521912, Blast_Score=132, Evalue=2e-31, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=34.4, Blast_Score=128, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=32.8413284132841, Blast_Score=124, Evalue=7e-29, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=34.5588235294118, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17562906, Length=273, Percent_Identity=33.3333333333333, Blast_Score=116, Evalue=9e-27, Organism=Caenorhabditis elegans, GI17560150, Length=276, Percent_Identity=30.0724637681159, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562908, Length=273, Percent_Identity=31.5018315018315, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562904, Length=271, Percent_Identity=29.8892988929889, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI193204405, Length=273, Percent_Identity=30.4029304029304, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=31.0861423220974, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562990, Length=269, Percent_Identity=29.7397769516729, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17560220, Length=274, Percent_Identity=30.6569343065693, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17562910, Length=281, Percent_Identity=30.2491103202847, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17561402, Length=261, Percent_Identity=34.0996168582375, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=29.3233082706767, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=29.2, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=33.4630350194552, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI72000259, Length=272, Percent_Identity=27.5735294117647, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=28.5185185185185, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=30.8, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=30.2325581395349, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=28.7822878228782, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17563726, Length=272, Percent_Identity=26.8382352941176, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17565030, Length=274, Percent_Identity=27.7372262773723, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=29.9610894941634, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=31.1284046692607, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71982365, Length=148, Percent_Identity=35.8108108108108, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17564282, Length=199, Percent_Identity=31.1557788944724, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193203117, Length=199, Percent_Identity=30.1507537688442, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=27.9850746268657, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17558628, Length=254, Percent_Identity=31.8897637795276, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=30.3030303030303, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17567345, Length=197, Percent_Identity=30.9644670050761, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71997402, Length=199, Percent_Identity=29.1457286432161, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17570069, Length=197, Percent_Identity=28.4263959390863, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=32.8205128205128, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=27.0588235294118, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=28.740157480315, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI32563809, Length=203, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17507613, Length=203, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=25.9067357512953, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=28.2868525896414, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322227, Length=203, Percent_Identity=25.1231527093596, Blast_Score=69, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=261, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=8e-13, Organism=Drosophila melanogaster, GI21357041, Length=268, Percent_Identity=33.2089552238806, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI28571526, Length=268, Percent_Identity=33.5820895522388, Blast_Score=126, Evalue=1e-29, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=34.8, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI24644339, Length=259, Percent_Identity=32.4324324324324, Blast_Score=124, Evalue=5e-29, Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=35.0194552529183, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=33.206106870229, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=33.0645161290323, Blast_Score=103, Evalue=7e-23, Organism=Drosophila melanogaster, GI21355319, Length=258, Percent_Identity=30.6201550387597, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24640492, Length=192, Percent_Identity=30.2083333333333, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=29.2490118577075, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI21358495, Length=207, Percent_Identity=29.951690821256, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI18859837, Length=210, Percent_Identity=32.8571428571429, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21357673, Length=148, Percent_Identity=33.7837837837838, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24641232, Length=248, Percent_Identity=29.4354838709677, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=27.2357723577236, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24584752, Length=189, Percent_Identity=32.2751322751323, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI116007234, Length=246, Percent_Identity=28.8617886178862, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI281364892, Length=188, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640442, Length=197, Percent_Identity=31.4720812182741, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355631, Length=181, Percent_Identity=28.7292817679558, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24649181, Length=191, Percent_Identity=26.7015706806283, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI116007236, Length=204, Percent_Identity=25.9803921568627, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.163 [H]
Molecular weight: Translated: 27086; Mature: 26955
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRVDNKVALVTGGAKGIGRASALMLAREGARVVLTDVEEAQGSAVAKEIERAGGKALFL CCCCCCEEEEEECCCCCCCHHHHHEEECCCCEEEEEECCHHCCHHHHHHHHHCCCCEEEE TQDVTDESRWVEVVEKARAQFGGLNIVVNNAGIGTAGSAEDETLEAWRRLMSVNLDGVFL EECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE GTKHAIRAMKNGPGTGSIINISSIEGIVADPKLASYNASKGGVRIFSKSAALHCAQAGYR CHHHHHHHHHCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHCCCCE IRVNTIHPGYIWTPMVEGYLTSLGDVEGGRQVISKMHPIGRMGEPDDIAYGVLYLGSDES EEEEEECCCEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCC SFMTGSELVIDGGYTAQ CEECCCEEEEECCCCCC >Mature Secondary Structure GRVDNKVALVTGGAKGIGRASALMLAREGARVVLTDVEEAQGSAVAKEIERAGGKALFL CCCCCEEEEEECCCCCCCHHHHHEEECCCCEEEEEECCHHCCHHHHHHHHHCCCCEEEE TQDVTDESRWVEVVEKARAQFGGLNIVVNNAGIGTAGSAEDETLEAWRRLMSVNLDGVFL EECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE GTKHAIRAMKNGPGTGSIINISSIEGIVADPKLASYNASKGGVRIFSKSAALHCAQAGYR CHHHHHHHHHCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHCCCCE IRVNTIHPGYIWTPMVEGYLTSLGDVEGGRQVISKMHPIGRMGEPDDIAYGVLYLGSDES EEEEEECCCEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCC SFMTGSELVIDGGYTAQ CEECCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12406764 [H]