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The map label for this gene is ydfH [C]

Identifier: 124265979

GI number: 124265979

Start: 821555

End: 822316

Strand: Reverse

Name: ydfH [C]

Synonym: Mpe_A0786

Alternate gene names: 124265979

Gene position: 822316-821555 (Counterclockwise)

Preceding gene: 124265980

Following gene: 124265978

Centisome position: 20.33

GC content: 73.62

Gene sequence:

>762_bases
ATGCCAGCACGCCCCGCCCCGACGAAGCCCACCCCCCGCCCCGCCCCGCCCCGCCGCCCGACCGCAAGGCCCGCCGCGCG
GCGCTCCTCCGATCCGCTGGCCGCCGCGCCGTCGACCCGGCCCGAGACGCTGACCGGTCAGGCCTACCGGAAGATCGAGG
AACTGATCGTCACGCTGGAGCTGCGCCCCGGCACCGCGATGTCGGAGGCCGAGCTGTCGCAGCGTCTCGGCATCGGCCGC
ACGCCGGTGCGCGAGGCGCTGCAGCGGCTCGCTCGCGAACACCTGGTGTCGATCCTCCCGCAGCGCGGCAACCTGGTGTC
CGAGATCGACGTGCGCAAGCAGTTGCGCCTGCTGGAGACGCGCCGCGAGGTGGAACGGCTGATCGTGCGCTGCGCCGCGC
GCCGCGCCGGCGACGACGAGCTCGCCGAGTTCACCGAGCTCGCCAAGGCCTTCGAGGCGGCCGCGATCAGCGGCGATGCC
ACCGCCTTCATGCGCGCGGACAAGGCCTTCAACGATCTGAGCCTGAAGGCCGCACGCAACGAGTTCGCGGCCGGCGCGAT
GGGCCTGATGCACGGCCTGTCGCGGCGCTTCTGGTTCCTGCACTACCGCCAGGCGGCCGACCTGCCGGCCATGGCGGCGC
TGCACGGCCGGCTGGCGCGCGCGATCGTGGCGCGGGACGAGGCTGCCGCGGCCCACGCCCTCGACGCGCTGCTCGACAAC
CTGGAAGAGTTCACCAAGGCAACGGTGTCGGTCGAGGTCTGA

Upstream 100 bases:

>100_bases
CTGTGCCGCCGACCCGATCGATGCGGGTGCCGCGCCCCGGAGATCGACTGTCGACCGCGGGGGCGCGGTCACAGCGGCCG
ATCCATAGAAGAGCAGCAAG

Downstream 100 bases:

>100_bases
TCGCGCTTCTGGCCGGTGGGCTCGGTGGAGACGAATCCGCAACAGGGTTGATCCACGGCGCGTGCTCGGGGATCACCTCG
TCGCACCTCGCGATCGGTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MPARPAPTKPTPRPAPPRRPTARPAARRSSDPLAAAPSTRPETLTGQAYRKIEELIVTLELRPGTAMSEAELSQRLGIGR
TPVREALQRLAREHLVSILPQRGNLVSEIDVRKQLRLLETRREVERLIVRCAARRAGDDELAEFTELAKAFEAAAISGDA
TAFMRADKAFNDLSLKAARNEFAAGAMGLMHGLSRRFWFLHYRQAADLPAMAALHGRLARAIVARDEAAAAHALDALLDN
LEEFTKATVSVEV

Sequences:

>Translated_253_residues
MPARPAPTKPTPRPAPPRRPTARPAARRSSDPLAAAPSTRPETLTGQAYRKIEELIVTLELRPGTAMSEAELSQRLGIGR
TPVREALQRLAREHLVSILPQRGNLVSEIDVRKQLRLLETRREVERLIVRCAARRAGDDELAEFTELAKAFEAAAISGDA
TAFMRADKAFNDLSLKAARNEFAAGAMGLMHGLSRRFWFLHYRQAADLPAMAALHGRLARAIVARDEAAAAHALDALLDN
LEEFTKATVSVEV
>Mature_252_residues
PARPAPTKPTPRPAPPRRPTARPAARRSSDPLAAAPSTRPETLTGQAYRKIEELIVTLELRPGTAMSEAELSQRLGIGRT
PVREALQRLAREHLVSILPQRGNLVSEIDVRKQLRLLETRREVERLIVRCAARRAGDDELAEFTELAKAFEAAAISGDAT
AFMRADKAFNDLSLKAARNEFAAGAMGLMHGLSRRFWFLHYRQAADLPAMAALHGRLARAIVARDEAAAAHALDALLDNL
EEFTKATVSVEV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=25.3658536585366, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27765; Mature: 27634

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARPAPTKPTPRPAPPRRPTARPAARRSSDPLAAAPSTRPETLTGQAYRKIEELIVTLE
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEE
LRPGTAMSEAELSQRLGIGRTPVREALQRLAREHLVSILPQRGNLVSEIDVRKQLRLLET
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
RREVERLIVRCAARRAGDDELAEFTELAKAFEAAAISGDATAFMRADKAFNDLSLKAARN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EFAAGAMGLMHGLSRRFWFLHYRQAADLPAMAALHGRLARAIVARDEAAAAHALDALLDN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEEFTKATVSVEV
HHHHHHHHHCCCC
>Mature Secondary Structure 
PARPAPTKPTPRPAPPRRPTARPAARRSSDPLAAAPSTRPETLTGQAYRKIEELIVTLE
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEE
LRPGTAMSEAELSQRLGIGRTPVREALQRLAREHLVSILPQRGNLVSEIDVRKQLRLLET
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
RREVERLIVRCAARRAGDDELAEFTELAKAFEAAAISGDATAFMRADKAFNDLSLKAARN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EFAAGAMGLMHGLSRRFWFLHYRQAADLPAMAALHGRLARAIVARDEAAAAHALDALLDN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEEFTKATVSVEV
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]