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The map label for this gene is ydfH [H]

Identifier: 124265971

GI number: 124265971

Start: 813134

End: 813895

Strand: Reverse

Name: ydfH [H]

Synonym: Mpe_A0778

Alternate gene names: 124265971

Gene position: 813895-813134 (Counterclockwise)

Preceding gene: 124265977

Following gene: 124265970

Centisome position: 20.13

GC content: 73.1

Gene sequence:

>762_bases
ATGCCTCGCACCGCCGCCGCACCGCTCCAGGCCCTGAAGCCCGCACCGTCGCGGCGCCACCGTGCCGGCGCGGCAGCACG
CGCCGCGCCGGAGGCCGACACCAGTGCCACGCAGCGCATCGTCGACGCGATCACCACCGCCATCGTCGAGCGCCGGCTGA
TGCCGGGCACCAAGCTGGCCGAGCAGAAGATCGCCGACCTCTTCAAGGTCTCGCGCACGCTGGTGCGCCAGGCCCTCAAC
CAGCTCAGCCGCGACCGCCTGGTCACGCTCGAGCCGGCGCGCGGCGCCTTCGTCGCCCGGCCCGGCGTGCAGGAGGCGCG
CCAGGTGTTCGAGGTGCGGCAGATGCTGGAGGCCGCGATGGTGCGCAAGCTGTGCGCAGTGATCACCGACGCGCAGATCG
CCGAGCTGCGCGCCCACCTGCGCGCCGAACGCGAGGCCGTGCTGCGCACCGACGTGCCCGGCCGCACCCGGCTGCTGGCC
GACTTCCACATGATCCTCGCCCGCATGGTCGGCAACGAGGTGCTGGCGCAGCTGCTGACCGACCTGCTGTCGCGCTCCTC
GCTGATCTCGCTGATGTACCAGTCCTCGCACTCGGCCGAGCATTCGCAGGCCGAGCACGTGGCCCTGGTCGATGCGCTGG
AACGGCGCGACGCCCGCGCCGCCGTGAAGCTGCTCGACGCCCACCTGCGCAACGTCGAGCGCAACCTGCGTCTCAACCCG
CGCGTCCACGACCTCGACGCCGCGTTGCGGCCGGCCGGCTGA

Upstream 100 bases:

>100_bases
GGCGTGGTCTGTGCACAAAAGTGTATACACTTTGCCGGTCGTCGCAAGCACCGTGCCACGGACTGCCGGGCCGCGACGCC
GCCGATACCGCACCGAAAAG

Downstream 100 bases:

>100_bases
GCCGCCGCACTGCGCTCGCTTCTTGCAAGGCCTGCCCACCATGGACCCGACCCCTGCCCCCTATCCCCGCGACCTGCGCG
GCTACGGCCGCGACGTCCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MPRTAAAPLQALKPAPSRRHRAGAAARAAPEADTSATQRIVDAITTAIVERRLMPGTKLAEQKIADLFKVSRTLVRQALN
QLSRDRLVTLEPARGAFVARPGVQEARQVFEVRQMLEAAMVRKLCAVITDAQIAELRAHLRAEREAVLRTDVPGRTRLLA
DFHMILARMVGNEVLAQLLTDLLSRSSLISLMYQSSHSAEHSQAEHVALVDALERRDARAAVKLLDAHLRNVERNLRLNP
RVHDLDAALRPAG

Sequences:

>Translated_253_residues
MPRTAAAPLQALKPAPSRRHRAGAAARAAPEADTSATQRIVDAITTAIVERRLMPGTKLAEQKIADLFKVSRTLVRQALN
QLSRDRLVTLEPARGAFVARPGVQEARQVFEVRQMLEAAMVRKLCAVITDAQIAELRAHLRAEREAVLRTDVPGRTRLLA
DFHMILARMVGNEVLAQLLTDLLSRSSLISLMYQSSHSAEHSQAEHVALVDALERRDARAAVKLLDAHLRNVERNLRLNP
RVHDLDAALRPAG
>Mature_252_residues
PRTAAAPLQALKPAPSRRHRAGAAARAAPEADTSATQRIVDAITTAIVERRLMPGTKLAEQKIADLFKVSRTLVRQALNQ
LSRDRLVTLEPARGAFVARPGVQEARQVFEVRQMLEAAMVRKLCAVITDAQIAELRAHLRAEREAVLRTDVPGRTRLLAD
FHMILARMVGNEVLAQLLTDLLSRSSLISLMYQSSHSAEHSQAEHVALVDALERRDARAAVKLLDAHLRNVERNLRLNPR
VHDLDAALRPAG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=202, Percent_Identity=25.7425742574257, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27942; Mature: 27811

Theoretical pI: Translated: 11.50; Mature: 11.50

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTAAAPLQALKPAPSRRHRAGAAARAAPEADTSATQRIVDAITTAIVERRLMPGTKLA
CCCCHHCHHHHHCCCCCHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
EQKIADLFKVSRTLVRQALNQLSRDRLVTLEPARGAFVARPGVQEARQVFEVRQMLEAAM
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHH
VRKLCAVITDAQIAELRAHLRAEREAVLRTDVPGRTRLLADFHMILARMVGNEVLAQLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DLLSRSSLISLMYQSSHSAEHSQAEHVALVDALERRDARAAVKLLDAHLRNVERNLRLNP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVHDLDAALRPAG
CHHHHHHHHCCCC
>Mature Secondary Structure 
PRTAAAPLQALKPAPSRRHRAGAAARAAPEADTSATQRIVDAITTAIVERRLMPGTKLA
CCCHHCHHHHHCCCCCHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
EQKIADLFKVSRTLVRQALNQLSRDRLVTLEPARGAFVARPGVQEARQVFEVRQMLEAAM
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHH
VRKLCAVITDAQIAELRAHLRAEREAVLRTDVPGRTRLLADFHMILARMVGNEVLAQLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DLLSRSSLISLMYQSSHSAEHSQAEHVALVDALERRDARAAVKLLDAHLRNVERNLRLNP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVHDLDAALRPAG
CHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]