| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is 124265970
Identifier: 124265970
GI number: 124265970
Start: 812149
End: 813093
Strand: Reverse
Name: 124265970
Synonym: Mpe_A0777
Alternate gene names: NA
Gene position: 813093-812149 (Counterclockwise)
Preceding gene: 124265971
Following gene: 124265969
Centisome position: 20.11
GC content: 69.21
Gene sequence:
>945_bases ATGGACCCGACCCCTGCCCCCTATCCCCGCGACCTGCGCGGCTACGGCCGCGACGTCCCGCACGCGCGCTGGCCCGGCGG CGCGAAGATCGCGGTGCAGTTCGTGCTCAATTACGAGGAAGGCGGCGAGAACAGCCCGCTGCACGGCGACCCCACCTCCG AGACCTTCCTGTCCGAGCTGATCACCGCGCAGGCCTACGAGAACCGCCACATGACCATGGAGTCGATGTACGAGTACGGC TCGCGCGTCGGCGTGTGGCGCATCCTGCGCGAGTTCGAGAAGCGCCGCCTGCCGCTCACGGTGTTCGGCGTCGGCATGGC GCTGCAGCGCTATCCGGAGCTGCTGGCCGCCTTCATGGAAAGCGGCTACGAGATCGCCAACCACGGCCTGCGCTGGATCC ACTACCAGAACCTGCCCGAGGCGACCGAGCGCCGCCACATCGGCATCGGCACCCAGCTGCTGCGCGAGCTGACCGGCGGC GCCTGGCCGCTCGGCTGGTACACCGGTCGCGACAGCCCCAACACGCGCCGGCTCGTCGCCGACCAGGGCGGCTACGAATA CGACAGCGACTACTACGGCGACGACCTGCCGTTCTGGACCGAGGTCGAAAAGACCGACGGCACCCGCGTGCCCCACCTCG TGGTGCCCTACTCGCTCGACACCAACGACATGCGCTTCGTGCAGGCGCAGGGCTTCAACACCGGCGAGCACTTCTTCACC TACCTGCGCGACAGCTTCGACGCGCTCTACGCCGAGGGCGAGGACGCACCCAAGATGATGTCGATCGGCATGCACTGCCG CCTGCTCGGCAAGCCCGGGCGCATCGGCGCGCTGCAGCGCTTCCTCGACCACATCGAGGCGCACGACCGCGTCTGGGTGT GCCGGCGCATCGACATCGCGCGGCACTGGCAGGCCACCCACCCCTGCGCGAAGGCCTCCACGTGA
Upstream 100 bases:
>100_bases AACCTGCGTCTCAACCCGCGCGTCCACGACCTCGACGCCGCGTTGCGGCCGGCCGGCTGAGCCGCCGCACTGCGCTCGCT TCTTGCAAGGCCTGCCCACC
Downstream 100 bases:
>100_bases CCACCGCTGCCCCCACCCCGCTGACGCTCGCCTGGCTCAACGATGCGCCGGCCGAGGCGGCGCTGGCCGCGCTCGACGGG CTCTACGAGCACTCGCCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: Urate Catabolism Protein; Polysaccharide Deacetylase Family Protein; Chitin Deacetylase; Xylanase/Chitin Deacetylase; Chitooligosaccharide Deacetylase; Chitooligosaccharide Deacetylase Protein; Polysaccharide Deacetylase Family; Polysaccharide Deacetylase Protein Pda4B; Carbohydrate Esterase Family 4 Domain Protein; Chitinase; Deacetylase Protein; Allantoinase; Uricase; Polysaccharide Deacetylase Domain Protein; Deacetylase
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MDPTPAPYPRDLRGYGRDVPHARWPGGAKIAVQFVLNYEEGGENSPLHGDPTSETFLSELITAQAYENRHMTMESMYEYG SRVGVWRILREFEKRRLPLTVFGVGMALQRYPELLAAFMESGYEIANHGLRWIHYQNLPEATERRHIGIGTQLLRELTGG AWPLGWYTGRDSPNTRRLVADQGGYEYDSDYYGDDLPFWTEVEKTDGTRVPHLVVPYSLDTNDMRFVQAQGFNTGEHFFT YLRDSFDALYAEGEDAPKMMSIGMHCRLLGKPGRIGALQRFLDHIEAHDRVWVCRRIDIARHWQATHPCAKAST
Sequences:
>Translated_314_residues MDPTPAPYPRDLRGYGRDVPHARWPGGAKIAVQFVLNYEEGGENSPLHGDPTSETFLSELITAQAYENRHMTMESMYEYG SRVGVWRILREFEKRRLPLTVFGVGMALQRYPELLAAFMESGYEIANHGLRWIHYQNLPEATERRHIGIGTQLLRELTGG AWPLGWYTGRDSPNTRRLVADQGGYEYDSDYYGDDLPFWTEVEKTDGTRVPHLVVPYSLDTNDMRFVQAQGFNTGEHFFT YLRDSFDALYAEGEDAPKMMSIGMHCRLLGKPGRIGALQRFLDHIEAHDRVWVCRRIDIARHWQATHPCAKAST >Mature_314_residues MDPTPAPYPRDLRGYGRDVPHARWPGGAKIAVQFVLNYEEGGENSPLHGDPTSETFLSELITAQAYENRHMTMESMYEYG SRVGVWRILREFEKRRLPLTVFGVGMALQRYPELLAAFMESGYEIANHGLRWIHYQNLPEATERRHIGIGTQLLRELTGG AWPLGWYTGRDSPNTRRLVADQGGYEYDSDYYGDDLPFWTEVEKTDGTRVPHLVVPYSLDTNDMRFVQAQGFNTGEHFFT YLRDSFDALYAEGEDAPKMMSIGMHCRLLGKPGRIGALQRFLDHIEAHDRVWVCRRIDIARHWQATHPCAKAST
Specific function: Unknown
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36003; Mature: 36003
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPTPAPYPRDLRGYGRDVPHARWPGGAKIAVQFVLNYEEGGENSPLHGDPTSETFLSEL CCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHH ITAQAYENRHMTMESMYEYGSRVGVWRILREFEKRRLPLTVFGVGMALQRYPELLAAFME HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHH SGYEIANHGLRWIHYQNLPEATERRHIGIGTQLLRELTGGAWPLGWYTGRDSPNTRRLVA CCHHHHHCCEEEEEECCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEE DQGGYEYDSDYYGDDLPFWTEVEKTDGTRVPHLVVPYSLDTNDMRFVQAQGFNTGEHFFT CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHH YLRDSFDALYAEGEDAPKMMSIGMHCRLLGKPGRIGALQRFLDHIEAHDRVWVCRRIDIA HHHHHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEHHHHHH RHWQATHPCAKAST HHHHCCCCCCCCCC >Mature Secondary Structure MDPTPAPYPRDLRGYGRDVPHARWPGGAKIAVQFVLNYEEGGENSPLHGDPTSETFLSEL CCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHH ITAQAYENRHMTMESMYEYGSRVGVWRILREFEKRRLPLTVFGVGMALQRYPELLAAFME HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHH SGYEIANHGLRWIHYQNLPEATERRHIGIGTQLLRELTGGAWPLGWYTGRDSPNTRRLVA CCHHHHHCCEEEEEECCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEE DQGGYEYDSDYYGDDLPFWTEVEKTDGTRVPHLVVPYSLDTNDMRFVQAQGFNTGEHFFT CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHH YLRDSFDALYAEGEDAPKMMSIGMHCRLLGKPGRIGALQRFLDHIEAHDRVWVCRRIDIA HHHHHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEHHHHHH RHWQATHPCAKAST HHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA