| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is braD [H]
Identifier: 124265891
GI number: 124265891
Start: 727937
End: 729541
Strand: Direct
Name: braD [H]
Synonym: Mpe_A0698
Alternate gene names: 124265891
Gene position: 727937-729541 (Clockwise)
Preceding gene: 124265890
Following gene: 124265892
Centisome position: 18.0
GC content: 71.65
Gene sequence:
>1605_bases TTGAATGCCTTGCGTGCTTTCCTGCTGAGCCTGTGCGCCGCCGGGCTGCTGGGGCTGGCTGCGGCTCCCGCGCGTGCCAT GACGCCCGCGCAGGCGCTCGCCATCTCGGCCGGCGACACCGACACCCGCGTCGCCGCCCTGCAGCAGGCCATCGCCGCGC TCGACCCGCGCGTGCCGGTGCTGGTGCAGGCGCTGCTGGACGGTGAGGTGAAGGTCGACGACCAGCGCGCCTACATCGTC GCGGCCGACGGCTCGGCCGTCGACGCCGCCACCGGCCAGCCGGCCACGCCCCCCGAGACCGCGGAAGACGCGGTCAACAA CAACCGCATGCGCGGCGAGCTGCAGGCCGCGCTGGCCGCGCTGCAGCTGATCACCGGCGACCTCACGCAACGCCGCGCCG CCATCGGCTCGCTGCGCGAGGCGATGGACGAGGCCAAGCTGCCGCTCATCGAGCAGGCGCTGGCCAAGGAGGCCGACCCC GCACTCAAGGCCGAGCTGGAGACGCTGCGCGCCAAGGGCCTGATCGCCTCCACCGACCCGGCCAAGCGCCTGCAGGCCGC GCAGGCCCTGGCCAGCAGCACCACGCCGGCCACCCGCAGCCTGCTGCTCGAGCGCCTGAAGCCGGCAGCCGAGGGCGGGG AGGCCGACCCCGCGGTGCGCGCGGCGCTGCAGGCCTCACTCGACGGCGTCAATTCCATGCTGGCCTGGGGCGAACGCGCC GGCGTCGTGTTCACCGGCATCAGCCTGGGTTCCATCCTGCTGCTGGCGGCGCTGGGCCTGGCCATCACCTACGGGCTGAT GGGCGTCATCAACATGGCGCACGGCGAGCTCATCATGATCGGCGCCTACGCCACCTACCTCACGCAGAACGCCTTCCGCG CCTGGCTGCCGGACCACTTCGACTGGTACATCGTCGCGGCCATCCCGCTGTCCTTCCTCGCCGCGGCGGCGGTGGGCGCG GTGCTGGAGCGCGGCGTCATCCGCTTCCTCTACGGCCGCCCGCTGGAGACGCTGCTCGCCACCTGGGGCATCAGCCTGGT GCTGATGCAGGGCGTGCGCTCGCTGTTCGGCGCACAGAACGTGCCGGTGGAGAACCCGGCCTGGCTGTCGGGCGGCGTGC AGATCATGAGCAACCTGGTGCTGCCGTGGAACCGCATCGCCATCGTGGTGTTCGCGGCCATCGTGCTGGGCGGCATCGCC TTCCTGATCGCGAAGACGCGGCTGGGGCTGTTCGTGCGCAGCGTCACCCAGAACCGCCCCATGGCCTCGTGCATGGGTGT CAACACCGCGCGCGTCGACACGCTGGCGTTCGCGCTCGGGGCCGGCGTGGCGGGGCTGGCGGGCTGCGCGGTCAGCCAGG TCGGCAACGTCGGGCCCGACCTGGGGCAGGGCTACATCGTCGACTCCTTCATGGTGGTGGTGCTGGGCGGCGTGGGCCAG CTCGCCGGCACCGTGTACGCGGCACTGGGGCTGGGCGTGATCAACAAGTTCCTCGAAGGCTGGGCCGGCGCCGTGCTGGC GAAGATCATCGTGCTGGTGTTCATCGTGGTGTTCATCCAGAAGCGGCCGCAGGGGCTGTTCGCATTGAAGGGGAGAGAGG CATGA
Upstream 100 bases:
>100_bases GCGGCGATCGGACTGTCCACCAGGTCGCCGCCGGTCCTGCCGGCGCGCAGCCTTCTTTTTCTTCTTCTCATGGCTTCCTA CTCTCCACGGTGACGACGAA
Downstream 100 bases:
>100_bases GTGCCGTGCTGACGCCTCCTCTGCCCGTGGCACCGCCGCGCAGTCGCCTGCTGCAGGGCAAGGCCTGGACGGCGCTGCTG GCCGCGGTGATCACCGTGAC
Product: putative branched-chain amino acid transport system, permease
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MNALRAFLLSLCAAGLLGLAAAPARAMTPAQALAISAGDTDTRVAALQQAIAALDPRVPVLVQALLDGEVKVDDQRAYIV AADGSAVDAATGQPATPPETAEDAVNNNRMRGELQAALAALQLITGDLTQRRAAIGSLREAMDEAKLPLIEQALAKEADP ALKAELETLRAKGLIASTDPAKRLQAAQALASSTTPATRSLLLERLKPAAEGGEADPAVRAALQASLDGVNSMLAWGERA GVVFTGISLGSILLLAALGLAITYGLMGVINMAHGELIMIGAYATYLTQNAFRAWLPDHFDWYIVAAIPLSFLAAAAVGA VLERGVIRFLYGRPLETLLATWGISLVLMQGVRSLFGAQNVPVENPAWLSGGVQIMSNLVLPWNRIAIVVFAAIVLGGIA FLIAKTRLGLFVRSVTQNRPMASCMGVNTARVDTLAFALGAGVAGLAGCAVSQVGNVGPDLGQGYIVDSFMVVVLGGVGQ LAGTVYAALGLGVINKFLEGWAGAVLAKIIVLVFIVVFIQKRPQGLFALKGREA
Sequences:
>Translated_534_residues MNALRAFLLSLCAAGLLGLAAAPARAMTPAQALAISAGDTDTRVAALQQAIAALDPRVPVLVQALLDGEVKVDDQRAYIV AADGSAVDAATGQPATPPETAEDAVNNNRMRGELQAALAALQLITGDLTQRRAAIGSLREAMDEAKLPLIEQALAKEADP ALKAELETLRAKGLIASTDPAKRLQAAQALASSTTPATRSLLLERLKPAAEGGEADPAVRAALQASLDGVNSMLAWGERA GVVFTGISLGSILLLAALGLAITYGLMGVINMAHGELIMIGAYATYLTQNAFRAWLPDHFDWYIVAAIPLSFLAAAAVGA VLERGVIRFLYGRPLETLLATWGISLVLMQGVRSLFGAQNVPVENPAWLSGGVQIMSNLVLPWNRIAIVVFAAIVLGGIA FLIAKTRLGLFVRSVTQNRPMASCMGVNTARVDTLAFALGAGVAGLAGCAVSQVGNVGPDLGQGYIVDSFMVVVLGGVGQ LAGTVYAALGLGVINKFLEGWAGAVLAKIIVLVFIVVFIQKRPQGLFALKGREA >Mature_534_residues MNALRAFLLSLCAAGLLGLAAAPARAMTPAQALAISAGDTDTRVAALQQAIAALDPRVPVLVQALLDGEVKVDDQRAYIV AADGSAVDAATGQPATPPETAEDAVNNNRMRGELQAALAALQLITGDLTQRRAAIGSLREAMDEAKLPLIEQALAKEADP ALKAELETLRAKGLIASTDPAKRLQAAQALASSTTPATRSLLLERLKPAAEGGEADPAVRAALQASLDGVNSMLAWGERA GVVFTGISLGSILLLAALGLAITYGLMGVINMAHGELIMIGAYATYLTQNAFRAWLPDHFDWYIVAAIPLSFLAAAAVGA VLERGVIRFLYGRPLETLLATWGISLVLMQGVRSLFGAQNVPVENPAWLSGGVQIMSNLVLPWNRIAIVVFAAIVLGGIA FLIAKTRLGLFVRSVTQNRPMASCMGVNTARVDTLAFALGAGVAGLAGCAVSQVGNVGPDLGQGYIVDSFMVVVLGGVGQ LAGTVYAALGLGVINKFLEGWAGAVLAKIIVLVFIVVFIQKRPQGLFALKGREA
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789866, Length=295, Percent_Identity=28.4745762711864, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 55407; Mature: 55407
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALRAFLLSLCAAGLLGLAAAPARAMTPAQALAISAGDTDTRVAALQQAIAALDPRVPV CHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHCCCHHH LVQALLDGEVKVDDQRAYIVAADGSAVDAATGQPATPPETAEDAVNNNRMRGELQAALAA HHHHHHCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHH LQLITGDLTQRRAAIGSLREAMDEAKLPLIEQALAKEADPALKAELETLRAKGLIASTDP HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCH AKRLQAAQALASSTTPATRSLLLERLKPAAEGGEADPAVRAALQASLDGVNSMLAWGERA HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC GVVFTGISLGSILLLAALGLAITYGLMGVINMAHGELIMIGAYATYLTQNAFRAWLPDHF CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCC DWYIVAAIPLSFLAAAAVGAVLERGVIRFLYGRPLETLLATWGISLVLMQGVRSLFGAQN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC VPVENPAWLSGGVQIMSNLVLPWNRIAIVVFAAIVLGGIAFLIAKTRLGLFVRSVTQNRP CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC MASCMGVNTARVDTLAFALGAGVAGLAGCAVSQVGNVGPDLGQGYIVDSFMVVVLGGVGQ HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHH LAGTVYAALGLGVINKFLEGWAGAVLAKIIVLVFIVVFIQKRPQGLFALKGREA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC >Mature Secondary Structure MNALRAFLLSLCAAGLLGLAAAPARAMTPAQALAISAGDTDTRVAALQQAIAALDPRVPV CHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHCCCHHH LVQALLDGEVKVDDQRAYIVAADGSAVDAATGQPATPPETAEDAVNNNRMRGELQAALAA HHHHHHCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHH LQLITGDLTQRRAAIGSLREAMDEAKLPLIEQALAKEADPALKAELETLRAKGLIASTDP HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCH AKRLQAAQALASSTTPATRSLLLERLKPAAEGGEADPAVRAALQASLDGVNSMLAWGERA HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC GVVFTGISLGSILLLAALGLAITYGLMGVINMAHGELIMIGAYATYLTQNAFRAWLPDHF CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCC DWYIVAAIPLSFLAAAAVGAVLERGVIRFLYGRPLETLLATWGISLVLMQGVRSLFGAQN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC VPVENPAWLSGGVQIMSNLVLPWNRIAIVVFAAIVLGGIAFLIAKTRLGLFVRSVTQNRP CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC MASCMGVNTARVDTLAFALGAGVAGLAGCAVSQVGNVGPDLGQGYIVDSFMVVVLGGVGQ HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHH LAGTVYAALGLGVINKFLEGWAGAVLAKIIVLVFIVVFIQKRPQGLFALKGREA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043; 2509433 [H]