| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is nhaA [H]
Identifier: 124265853
GI number: 124265853
Start: 694341
End: 695351
Strand: Direct
Name: nhaA [H]
Synonym: Mpe_A0660
Alternate gene names: 124265853
Gene position: 694341-695351 (Clockwise)
Preceding gene: 124265852
Following gene: 124265854
Centisome position: 17.17
GC content: 71.22
Gene sequence:
>1011_bases ATGAGCAGTTTCGACGATCCCGCCGAGCCCACGCTGGGCCCCGCCACGCCCGCCCGCCCCGCGGCCGCCGCCGGCGGCCC CGCGCCCACCAGCGTCGACGGGCGCGTGATCGAGGAGTTCGCGCGTGACTTCCTGAAGGAGCGCCGCAGCGAGCGGCGCT GGCGCGCGTTGCGACGGCTCGCCTGGCTGGTGATCTTCGCGCTCATCGCCTGGGCCCTGATCACGCAGCAGCGCAATGCC GCCGTGCCGAGCGGGCCGCACACCGCGCTGATCGAGATCCGCGGCGAGATCGCCGCAGAGGCGCTGGCAAGCGCCGAGGG CATCAATGCCGCGCTGCGCACCGCCTTCGAGGACGCCGGCGCCCAGGCCGTGGTGCTGCGCATCAACTCGCCCGGCGGCA GCCCGGTGCAGGCCGGCCTCGTGACCGACGAGATCAGGCGCCTGAAGGGGCTGCACGCCGACAAGAAGCTCTATGCGGTG TGCGAGGAACTGTGTGCCTCGGCGGCCTACTACATCGCCGCGGTGGCCGACGAGATCTTCGTCGACAAGGCGTCCATCGT CGGCTCGATCGGCGTGCTGATGGACGGCTTCGGATTCACCGGCACGATGGAGAAGCTCGGCGTCGAACGCCGCCTCATCA CCGCCGGCGACAACAAGGGCCTGCTCGACCCCTTCTCTCCGCTGAGCGAGGCCCACAAGGCCTATGCGCAGGCGATGGTC AACCAGATCCACCAGCAGTTCATCAAGGTGGTGAAGGACGGCCGCGGCGCGCGCCTGAAGGAGGCGCCCGAGACCTTCTC CGGCCTGTTCTGGAGCGGCGAGTCGGCGGTGCAGCAGGGTCTGGCCGACCGGCTCGGCAGCCTGGACTACGTGGCGCGCG AGGTGGTCAAGGCCGAAGAGGTGATCGACTACACCCCCAAGGAGAACGTGGCCGAGCGCCTGGCCAAGCGCTTCGGCGCC GCGGTCGGCGCCGGCGCGGCCAAGGCGCTCGCGGGACCGTCGCTGCGCTGA
Upstream 100 bases:
>100_bases TCAAGGCCGTTCGCGTGGCGGAGCGCGACGGCCAGGTGAGTTGGTATCCTTCCGCGGACATCCGGCCCGCCTTCGGCGCC GCTTCCACACCGAGCAGTCC
Downstream 100 bases:
>100_bases CGGCCGGAATTGCCGGCCTGTTCGGCGCTTCGACCGTCCTGCAAGTCTTCCAGAATCCTCCGAGGGCGGCGTTTGCCGCC CGCCCCCCCGCGCACGCGCG
Product: putative protease transmembrane protein
Products: NA
Alternate protein names: Sodium/proton antiporter nhaA [H]
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MSSFDDPAEPTLGPATPARPAAAAGGPAPTSVDGRVIEEFARDFLKERRSERRWRALRRLAWLVIFALIAWALITQQRNA AVPSGPHTALIEIRGEIAAEALASAEGINAALRTAFEDAGAQAVVLRINSPGGSPVQAGLVTDEIRRLKGLHADKKLYAV CEELCASAAYYIAAVADEIFVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLITAGDNKGLLDPFSPLSEAHKAYAQAMV NQIHQQFIKVVKDGRGARLKEAPETFSGLFWSGESAVQQGLADRLGSLDYVAREVVKAEEVIDYTPKENVAERLAKRFGA AVGAGAAKALAGPSLR
Sequences:
>Translated_336_residues MSSFDDPAEPTLGPATPARPAAAAGGPAPTSVDGRVIEEFARDFLKERRSERRWRALRRLAWLVIFALIAWALITQQRNA AVPSGPHTALIEIRGEIAAEALASAEGINAALRTAFEDAGAQAVVLRINSPGGSPVQAGLVTDEIRRLKGLHADKKLYAV CEELCASAAYYIAAVADEIFVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLITAGDNKGLLDPFSPLSEAHKAYAQAMV NQIHQQFIKVVKDGRGARLKEAPETFSGLFWSGESAVQQGLADRLGSLDYVAREVVKAEEVIDYTPKENVAERLAKRFGA AVGAGAAKALAGPSLR >Mature_335_residues SSFDDPAEPTLGPATPARPAAAAGGPAPTSVDGRVIEEFARDFLKERRSERRWRALRRLAWLVIFALIAWALITQQRNAA VPSGPHTALIEIRGEIAAEALASAEGINAALRTAFEDAGAQAVVLRINSPGGSPVQAGLVTDEIRRLKGLHADKKLYAVC EELCASAAYYIAAVADEIFVDKASIVGSIGVLMDGFGFTGTMEKLGVERRLITAGDNKGLLDPFSPLSEAHKAYAQAMVN QIHQQFIKVVKDGRGARLKEAPETFSGLFWSGESAVQQGLADRLGSLDYVAREVVKAEEVIDYTPKENVAERLAKRFGAA VGAGAAKALAGPSLR
Specific function: Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons [H]
COG id: COG0616
COG function: function code OU; Periplasmic serine proteases (ClpP class)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the peptidase S49 family [H]
Homologues:
Organism=Escherichia coli, GI1787527, Length=253, Percent_Identity=28.4584980237154, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788064, Length=211, Percent_Identity=26.5402843601896, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023171 - InterPro: IPR004670 - InterPro: IPR002142 [H]
Pfam domain/function: PF06965 Na_H_antiport_1; PF01343 Peptidase_S49 [H]
EC number: 3.4.21.- [C]
Molecular weight: Translated: 35777; Mature: 35646
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSFDDPAEPTLGPATPARPAAAAGGPAPTSVDGRVIEEFARDFLKERRSERRWRALRRL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AWLVIFALIAWALITQQRNAAVPSGPHTALIEIRGEIAAEALASAEGINAALRTAFEDAG HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC AQAVVLRINSPGGSPVQAGLVTDEIRRLKGLHADKKLYAVCEELCASAAYYIAAVADEIF CEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VDKASIVGSIGVLMDGFGFTGTMEKLGVERRLITAGDNKGLLDPFSPLSEAHKAYAQAMV HHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHH NQIHQQFIKVVKDGRGARLKEAPETFSGLFWSGESAVQQGLADRLGSLDYVAREVVKAEE HHHHHHHHHHHHCCCCCCCHHCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH VIDYTPKENVAERLAKRFGAAVGAGAAKALAGPSLR HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC >Mature Secondary Structure SSFDDPAEPTLGPATPARPAAAAGGPAPTSVDGRVIEEFARDFLKERRSERRWRALRRL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AWLVIFALIAWALITQQRNAAVPSGPHTALIEIRGEIAAEALASAEGINAALRTAFEDAG HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC AQAVVLRINSPGGSPVQAGLVTDEIRRLKGLHADKKLYAVCEELCASAAYYIAAVADEIF CEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VDKASIVGSIGVLMDGFGFTGTMEKLGVERRLITAGDNKGLLDPFSPLSEAHKAYAQAMV HHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHH NQIHQQFIKVVKDGRGARLKEAPETFSGLFWSGESAVQQGLADRLGSLDYVAREVVKAEE HHHHHHHHHHHHCCCCCCCHHCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH VIDYTPKENVAERLAKRFGAAVGAGAAKALAGPSLR HHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA