| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is rrmA [C]
Identifier: 124265810
GI number: 124265810
Start: 651523
End: 652221
Strand: Direct
Name: rrmA [C]
Synonym: Mpe_A0617
Alternate gene names: 124265810
Gene position: 651523-652221 (Clockwise)
Preceding gene: 124265809
Following gene: 124265823
Centisome position: 16.11
GC content: 62.37
Gene sequence:
>699_bases ATGTCCGACGTCTACGACTATCTGAAGGAGTCATTGCCCGGTGACCACAGCCGCCAAGCCACCGCGGAGGCCGTGCTGCA GGCGCGGGTGGCCAAGGGCTTCGCGCCGGCGAAAGTGCTGGACTTCGGCTGTGGTGACGGTCGCTCGATCGACCTGTTCC GCCGCATGCTGCCGCAGGTCGACTGGACCGGCGTGGACATCGAGGCCTCGCCGGAAGTGGCCAGCCGGCGGCGGCAGGAC GGGCGTTTCGTCACGTACGACGGTTACGAACTGCCGTTCCCTGATCGGAGCTTTCCTCTGGTGTACTCGCACCAAGTCCT CGAGCATGTACGTAAGCCCGAACTCGCGCTGCGCGAGATTGCAAGGGTTCTGGAGCCGGACGGCCTGTTCATCGGACAGA CCTCCCAGTTCGAGCCCTACCACTCGTACAGTCTCTGGAATTTCACGGTCTATGGTTTCAAACGCATCGTCGAGGACGCG GGGATGCAACTCGCAGAGTTGCGTCCCGGGATCGACGGTTTCACGCTGATGCGGCGGACCTACGAGGGCCGGCCACCCGA GATGTCGAAGTACTTCTCGCAGGAGTCGCCGATCAACGAAGAGATCGAGAAGGCGGCCGGCGACAAGAGAACCCAGGTCC GCAACTTCAGGAAACTCCTGTTCTGCGGGCAGTTCATCTTCGTCGTGCAGTTGCGATGA
Upstream 100 bases:
>100_bases GGTGGCGAAGCGTTGGGTGACGCTGATCGAAGACATCCTGAGCGACCGACACGAAGTCAGTTCAAACCCCTGAGACAAAC TTGAAGAGCCCGCACACGCC
Downstream 100 bases:
>100_bases TGCCTAGATGGAGAAGAGCACGCCGCGCCACTTGTTGAAAGTGTCGGCGAACTCTTGATCGAGCGGATTCGGCGAGAACA GCCAGTTGCGACCATCACCC
Product: ubiquinone/menaquinone biosynthesis methylase-like protein
Products: S-adenosyl-L-homocysteine +rRNA containing Nmethylguanine [C]
Alternate protein names: UbiE Family Methyltransferase; Ubiquinone/Menaquinone Biosynthesis Methylase-Like Protein; UbiE/COQ5 Family Methyltransferase
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MSDVYDYLKESLPGDHSRQATAEAVLQARVAKGFAPAKVLDFGCGDGRSIDLFRRMLPQVDWTGVDIEASPEVASRRRQD GRFVTYDGYELPFPDRSFPLVYSHQVLEHVRKPELALREIARVLEPDGLFIGQTSQFEPYHSYSLWNFTVYGFKRIVEDA GMQLAELRPGIDGFTLMRRTYEGRPPEMSKYFSQESPINEEIEKAAGDKRTQVRNFRKLLFCGQFIFVVQLR
Sequences:
>Translated_232_residues MSDVYDYLKESLPGDHSRQATAEAVLQARVAKGFAPAKVLDFGCGDGRSIDLFRRMLPQVDWTGVDIEASPEVASRRRQD GRFVTYDGYELPFPDRSFPLVYSHQVLEHVRKPELALREIARVLEPDGLFIGQTSQFEPYHSYSLWNFTVYGFKRIVEDA GMQLAELRPGIDGFTLMRRTYEGRPPEMSKYFSQESPINEEIEKAAGDKRTQVRNFRKLLFCGQFIFVVQLR >Mature_231_residues SDVYDYLKESLPGDHSRQATAEAVLQARVAKGFAPAKVLDFGCGDGRSIDLFRRMLPQVDWTGVDIEASPEVASRRRQDG RFVTYDGYELPFPDRSFPLVYSHQVLEHVRKPELALREIARVLEPDGLFIGQTSQFEPYHSYSLWNFTVYGFKRIVEDAG MQLAELRPGIDGFTLMRRTYEGRPPEMSKYFSQESPINEEIEKAAGDKRTQVRNFRKLLFCGQFIFVVQLR
Specific function: Specifically Methylates The Guanosine In Position 745 Of 23s rRNA. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.1.1.51 [C]
Molecular weight: Translated: 26699; Mature: 26567
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVYDYLKESLPGDHSRQATAEAVLQARVAKGFAPAKVLDFGCGDGRSIDLFRRMLPQV CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCHHHHHHHCCCC DWTGVDIEASPEVASRRRQDGRFVTYDGYELPFPDRSFPLVYSHQVLEHVRKPELALREI CCCCCCCCCCCHHHHHHHCCCCEEEECCEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHH ARVLEPDGLFIGQTSQFEPYHSYSLWNFTVYGFKRIVEDAGMQLAELRPGIDGFTLMRRT HHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHH YEGRPPEMSKYFSQESPINEEIEKAAGDKRTQVRNFRKLLFCGQFIFVVQLR HCCCCCHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEC >Mature Secondary Structure SDVYDYLKESLPGDHSRQATAEAVLQARVAKGFAPAKVLDFGCGDGRSIDLFRRMLPQV CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCHHHHHHHCCCC DWTGVDIEASPEVASRRRQDGRFVTYDGYELPFPDRSFPLVYSHQVLEHVRKPELALREI CCCCCCCCCCCHHHHHHHCCCCEEEECCEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHH ARVLEPDGLFIGQTSQFEPYHSYSLWNFTVYGFKRIVEDAGMQLAELRPGIDGFTLMRRT HHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHH YEGRPPEMSKYFSQESPINEEIEKAAGDKRTQVRNFRKLLFCGQFIFVVQLR HCCCCCHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Unidentified protein factor B [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: S-Adenosyl-L-methionine; rRNA [C]
Specific reaction: S-Adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine +rRNA containing Nmethylguanine [C]
General reaction: Methyl group transfer [C]
Inhibitor: Mg2+; Unidentified protein factor A1 [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA