| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is epsC [H]
Identifier: 124265802
GI number: 124265802
Start: 640725
End: 642653
Strand: Direct
Name: epsC [H]
Synonym: Mpe_A0609
Alternate gene names: 124265802
Gene position: 640725-642653 (Clockwise)
Preceding gene: 124265801
Following gene: 124265803
Centisome position: 15.84
GC content: 70.81
Gene sequence:
>1929_bases ATGACCCCGACGCCTTCCGTGTGGCACTGGCTCGACGCCCGGCTGAGCCGCGTGCGCCCGCATCGCGAGCGGCTGGCGCT GCTGATCGACGCCGCGGTCATCGCCGTCTGCTGGCAGTTCACCTACCTGTTCCGGCTCGGCTTCGAGCGCTGGTTCAGCG CGCGGCCCGTCTACGACGGCTGGGTGCTGCTGGGTATCGTGAGCCTCTACGTGGCGGTGTTCCTGGTGCTGCGCGTTCCG CGCGGCATGTGGCGCTTCTCCGGCTTCGGCGAGATCAAGCGCCTGACGATCGCCTGCACGCTGGCGGGCGGGCTGGCCGC CGCCGCGGTGATGGGGGCCGAGCTGCGCGCCATCCCGCGCGCGGTGCTGGCGCTGCACCCCATCGTCGCGCTGATGGGCC TGGCCAGCGTGCGCATCGCCTACCGCATGCTCTACGAGCACCTGCGCGCGCGCATCTCCGGCAGCGCCCGCGAGACGCGC CGGGCGCTGGTGCTCGGCGCGGGCGACGCGGCGCGCCTGCTGCTCGCCGGCCTGCAGCACCAGGGCTGGGTGGTGGCGGG CCTGCTCGACGACCACCCGGCCAAGCAACGCGCCCGCATCGGCGGCGTGCCGGTGATCGGCCCGCTCGCGAGCGTGGTCG AGCACGTGCGGCTGCTCGACATCAGCCACGTCATCATCGCCATGCCCTCGCTGCGCGGCGCGGCGCGCCGTCGCGTGATC GATCTTGCAGCCGAGACCGGCCTGCCGGTGCTCACCGTGCCCTCCGCCGAGGAACTGCTGGAAGGCGCCGCCGTCAGCCG GGTGCGCGACATCGAGCCGGAAGACCTGCTGGGCCGTGAGCCGGTGGTGCTCGACGAAGCCGGCATCTCCGAGTGCCTGA AGGGCAAGTGCGTGATGATCACCGGCGCGGGCGGCAGCATCGGCAGCGAGCTGTGCCGGCAGGTGGCGCGCTACGGGCCG TCGATGCTGGTGCTGTACGAGCTGAGCGAGTTCAACCTCTACACCATCGAGCAGTCGCTGAGCGACAGCTTCCCCGCGCT GCCGCTGGTGCGCCTGATCGGTGACGTGAAGAACGCCGCGCACCTGCGGCAGGTGATGGCGCGCTGGCGGCCGCAGATCG TGTTCCATGCCGCGGCCTACAAGCACGTGCCGCTGATGGAGGAGGAGCACAACGCCTGGGCGGCGCTGCAGAACAACACG CTGGGCACTTGGCTGGCGGCCAGCGAGGCGGCGCGAGCCGGGGCGGAGCGCTTCGTGCTCATCAGCACCGACAAGGCGGT GAACCCGACCAACGTGATGGGTGCGACCAAGCGCGCGGCCGAGATGATGATCTCGCACCTGGCCTCGCAGGGCCATGCGA CGCGCTTCATGGCCGTGCGCTTCGGCAATGTGCTCGGCTCCAGCGGCAGCGTGATCCCCAAGTTCAAGGAACAGATCGCC AAGGGCGGCCCGGTGACGGTGACCCATGCCGAGATCACGCGCTATTTCATGACCATCCCGGAGGCCGCGAGGCTGGTGGT GCAGGCGGCCGCGATCGGCGAGACCGGGCAGGTGTACGTGCTGGACATGGGCGAGCCGGTGCGCATCGTCGACCTGGCGC GCGACCTGATCCGCCTGGCGGGCCACACGGTCGAGGAGATCGGCATCGTGTACAGCGGCCTGCGAGCCGGTGAGAAGCTC TACGAGGAACTGCTGGCCGACGCCGACCACACGTTGCCCACGCCGATCGCGCGGTTGCTGATCGCGCGCATCGAGGCCGA CGTGTCGCGTGTGTCGGTGCTGGTCGACCGGGCGCTGCATCCCGACAGCGCGACGGCCGACGAGGTGCGGCGGCAGCTGA TGTGCGCAGTGCCGGAGTACCGGGCTGTCGGCGAGACCATCGCGGCCGCTTCCTCGGGTGACGTGCCTTTTCCTGTGGAC CCGGAATAG
Upstream 100 bases:
>100_bases GCCTCGACCGCGACCGACCTGGGCGTGCTGTGGCGCTCGGTGAAGCTGCTGCTGGGAAGCGGAAAACGATAATCGCAGCC GTTCCGTCTTCCCGCCTTTC
Downstream 100 bases:
>100_bases ATCGCTCGGCATGAATGTCGCCTATCTCGACCCTCCTTACAGCCGCTACTTCCACGAGCTGGCGGCGCGGTTGGCTCGGC CTTCGGGCGGCAGTGTCGTC
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 642; Mature: 641
Protein sequence:
>642_residues MTPTPSVWHWLDARLSRVRPHRERLALLIDAAVIAVCWQFTYLFRLGFERWFSARPVYDGWVLLGIVSLYVAVFLVLRVP RGMWRFSGFGEIKRLTIACTLAGGLAAAAVMGAELRAIPRAVLALHPIVALMGLASVRIAYRMLYEHLRARISGSARETR RALVLGAGDAARLLLAGLQHQGWVVAGLLDDHPAKQRARIGGVPVIGPLASVVEHVRLLDISHVIIAMPSLRGAARRRVI DLAAETGLPVLTVPSAEELLEGAAVSRVRDIEPEDLLGREPVVLDEAGISECLKGKCVMITGAGGSIGSELCRQVARYGP SMLVLYELSEFNLYTIEQSLSDSFPALPLVRLIGDVKNAAHLRQVMARWRPQIVFHAAAYKHVPLMEEEHNAWAALQNNT LGTWLAASEAARAGAERFVLISTDKAVNPTNVMGATKRAAEMMISHLASQGHATRFMAVRFGNVLGSSGSVIPKFKEQIA KGGPVTVTHAEITRYFMTIPEAARLVVQAAAIGETGQVYVLDMGEPVRIVDLARDLIRLAGHTVEEIGIVYSGLRAGEKL YEELLADADHTLPTPIARLLIARIEADVSRVSVLVDRALHPDSATADEVRRQLMCAVPEYRAVGETIAAASSGDVPFPVD PE
Sequences:
>Translated_642_residues MTPTPSVWHWLDARLSRVRPHRERLALLIDAAVIAVCWQFTYLFRLGFERWFSARPVYDGWVLLGIVSLYVAVFLVLRVP RGMWRFSGFGEIKRLTIACTLAGGLAAAAVMGAELRAIPRAVLALHPIVALMGLASVRIAYRMLYEHLRARISGSARETR RALVLGAGDAARLLLAGLQHQGWVVAGLLDDHPAKQRARIGGVPVIGPLASVVEHVRLLDISHVIIAMPSLRGAARRRVI DLAAETGLPVLTVPSAEELLEGAAVSRVRDIEPEDLLGREPVVLDEAGISECLKGKCVMITGAGGSIGSELCRQVARYGP SMLVLYELSEFNLYTIEQSLSDSFPALPLVRLIGDVKNAAHLRQVMARWRPQIVFHAAAYKHVPLMEEEHNAWAALQNNT LGTWLAASEAARAGAERFVLISTDKAVNPTNVMGATKRAAEMMISHLASQGHATRFMAVRFGNVLGSSGSVIPKFKEQIA KGGPVTVTHAEITRYFMTIPEAARLVVQAAAIGETGQVYVLDMGEPVRIVDLARDLIRLAGHTVEEIGIVYSGLRAGEKL YEELLADADHTLPTPIARLLIARIEADVSRVSVLVDRALHPDSATADEVRRQLMCAVPEYRAVGETIAAASSGDVPFPVD PE >Mature_641_residues TPTPSVWHWLDARLSRVRPHRERLALLIDAAVIAVCWQFTYLFRLGFERWFSARPVYDGWVLLGIVSLYVAVFLVLRVPR GMWRFSGFGEIKRLTIACTLAGGLAAAAVMGAELRAIPRAVLALHPIVALMGLASVRIAYRMLYEHLRARISGSARETRR ALVLGAGDAARLLLAGLQHQGWVVAGLLDDHPAKQRARIGGVPVIGPLASVVEHVRLLDISHVIIAMPSLRGAARRRVID LAAETGLPVLTVPSAEELLEGAAVSRVRDIEPEDLLGREPVVLDEAGISECLKGKCVMITGAGGSIGSELCRQVARYGPS MLVLYELSEFNLYTIEQSLSDSFPALPLVRLIGDVKNAAHLRQVMARWRPQIVFHAAAYKHVPLMEEEHNAWAALQNNTL GTWLAASEAARAGAERFVLISTDKAVNPTNVMGATKRAAEMMISHLASQGHATRFMAVRFGNVLGSSGSVIPKFKEQIAK GGPVTVTHAEITRYFMTIPEAARLVVQAAAIGETGQVYVLDMGEPVRIVDLARDLIRLAGHTVEEIGIVYSGLRAGEKLY EELLADADHTLPTPIARLLIARIEADVSRVSVLVDRALHPDSATADEVRRQLMCAVPEYRAVGETIAAASSGDVPFPVDP E
Specific function: Involved in biofilm formation [H]
COG id: COG1086
COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR003869 [H]
Pfam domain/function: PF02719 Polysacc_synt_2 [H]
EC number: NA
Molecular weight: Translated: 69766; Mature: 69635
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPTPSVWHWLDARLSRVRPHRERLALLIDAAVIAVCWQFTYLFRLGFERWFSARPVYDG CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH WVLLGIVSLYVAVFLVLRVPRGMWRFSGFGEIKRLTIACTLAGGLAAAAVMGAELRAIPR HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH AVLALHPIVALMGLASVRIAYRMLYEHLRARISGSARETRRALVLGAGDAARLLLAGLQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCHHHHHHHHHCCC QGWVVAGLLDDHPAKQRARIGGVPVIGPLASVVEHVRLLDISHVIIAMPSLRGAARRRVI CCEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH DLAAETGLPVLTVPSAEELLEGAAVSRVRDIEPEDLLGREPVVLDEAGISECLKGKCVMI HHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCCCHHHHHCCCEEEE TGAGGSIGSELCRQVARYGPSMLVLYELSEFNLYTIEQSLSDSFPALPLVRLIGDVKNAA ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHH HLRQVMARWRPQIVFHAAAYKHVPLMEEEHNAWAALQNNTLGTWLAASEAARAGAERFVL HHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEE ISTDKAVNPTNVMGATKRAAEMMISHLASQGHATRFMAVRFGNVLGSSGSVIPKFKEQIA EECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHCCCCCCCHHHHHHHC KGGPVTVTHAEITRYFMTIPEAARLVVQAAAIGETGQVYVLDMGEPVRIVDLARDLIRLA CCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH GHTVEEIGIVYSGLRAGEKLYEELLADADHTLPTPIARLLIARIEADVSRVSVLVDRALH CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PDSATADEVRRQLMCAVPEYRAVGETIAAASSGDVPFPVDPE CCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TPTPSVWHWLDARLSRVRPHRERLALLIDAAVIAVCWQFTYLFRLGFERWFSARPVYDG CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH WVLLGIVSLYVAVFLVLRVPRGMWRFSGFGEIKRLTIACTLAGGLAAAAVMGAELRAIPR HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH AVLALHPIVALMGLASVRIAYRMLYEHLRARISGSARETRRALVLGAGDAARLLLAGLQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCHHHHHHHHHCCC QGWVVAGLLDDHPAKQRARIGGVPVIGPLASVVEHVRLLDISHVIIAMPSLRGAARRRVI CCEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH DLAAETGLPVLTVPSAEELLEGAAVSRVRDIEPEDLLGREPVVLDEAGISECLKGKCVMI HHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCCCHHHHHCCCEEEE TGAGGSIGSELCRQVARYGPSMLVLYELSEFNLYTIEQSLSDSFPALPLVRLIGDVKNAA ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHH HLRQVMARWRPQIVFHAAAYKHVPLMEEEHNAWAALQNNTLGTWLAASEAARAGAERFVL HHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEE ISTDKAVNPTNVMGATKRAAEMMISHLASQGHATRFMAVRFGNVLGSSGSVIPKFKEQIA EECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHCCCCCCCHHHHHHHC KGGPVTVTHAEITRYFMTIPEAARLVVQAAAIGETGQVYVLDMGEPVRIVDLARDLIRLA CCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH GHTVEEIGIVYSGLRAGEKLYEELLADADHTLPTPIARLLIARIEADVSRVSVLVDRALH CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PDSATADEVRRQLMCAVPEYRAVGETIAAASSGDVPFPVDPE CCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]