| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is 124024671
Identifier: 124024671
GI number: 124024671
Start: 2635452
End: 2636228
Strand: Reverse
Name: 124024671
Synonym: P9303_29831
Alternate gene names: NA
Gene position: 2636228-2635452 (Counterclockwise)
Preceding gene: 124024673
Following gene: 124024670
Centisome position: 98.27
GC content: 53.28
Gene sequence:
>777_bases TTGAATTCTTTCTGGCCTGGCGACCACTCGTCCTCAAAAGAGTTTGCGACTGTGTGCGATAGCGACGGGATGCCATGGTT GCAGTCGACTATTAAGACTGGAATGACTTCAGCAGTTTCGGATGTCTTAGATCCGTGGCCGTTGTTACGAAAGCATGAGG AGGATGGTTGTAAGCGCGCTTTGCGTTTGATCGTGCATGGCCGTGCTGGTGGGTATGTTCCTTCTTGTGTGCGTTCTTTT GCTCTGCAGGTCGCGCAACGTCGTGGCACACCTGTGCTGGTAGAGGCCTTAACGGCTACTGATCGCCATGAGCAGAGTGC AGATCCTATTTGGCTTGTTCCTTTGTTGTTGTTGCCTGGTTCTCATGTTCGAGAGGATGTGCCGTTGATTCGTCAGCGAC TTCAGCAACAGGGTGTGAACACCAGGTTGGTGCCTTTCTTGGGTGCCTGGCCCTCTTGGTGGCGATTGTTACAGGAGTGG GTGCAGCGTCAGGATTGCCGTCATGGCTCTCTTGTTTTGGTTCACCATCCCCTTCGCCAGGGTGTTGCTCATCGCTATTT AAGTTTGCTGCAGCAGCGGCTGGCGTTGCCCATGCTTTCCTGGGACGATTGGCATGCTGATGTCGCTTCAGCGAAGGAGG CATCCACGCCTCTTTTTCTCGCCTTGGCGCCAATCCAGATTACGGAGACGCTGCGCGCTTCTGGGGTGATGACTTCCCTA CTTGAGATTGAGTTATTGCGATTGGGTCTGATTGATTTGCTGGCTGCATTGCCATGA
Upstream 100 bases:
>100_bases TCTCCCAACCAGCGGATTGTGCCTTGTCGGAGCATTCTCCACACACGGTTCATGGCAGCCAAATCCCTTTCGAAGTCACT GTTGAAGGGTTTTGAGCGGT
Downstream 100 bases:
>100_bases GCTGCTTGGACTTTGGCACTGTGTATTTGGTGGGTGCAGGCCCTGGTGATCCTGATTTGCTCACACTGAAGGCTTATCGT CTGCTTCGCCAATGCGGAGC
Product: DNA mismatch repair proteins
Products: NA
Alternate protein names: DNA Mismatch Repair Proteins; DNA Mismatch Repair Protein MutS Fa
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MNSFWPGDHSSSKEFATVCDSDGMPWLQSTIKTGMTSAVSDVLDPWPLLRKHEEDGCKRALRLIVHGRAGGYVPSCVRSF ALQVAQRRGTPVLVEALTATDRHEQSADPIWLVPLLLLPGSHVREDVPLIRQRLQQQGVNTRLVPFLGAWPSWWRLLQEW VQRQDCRHGSLVLVHHPLRQGVAHRYLSLLQQRLALPMLSWDDWHADVASAKEASTPLFLALAPIQITETLRASGVMTSL LEIELLRLGLIDLLAALP
Sequences:
>Translated_258_residues MNSFWPGDHSSSKEFATVCDSDGMPWLQSTIKTGMTSAVSDVLDPWPLLRKHEEDGCKRALRLIVHGRAGGYVPSCVRSF ALQVAQRRGTPVLVEALTATDRHEQSADPIWLVPLLLLPGSHVREDVPLIRQRLQQQGVNTRLVPFLGAWPSWWRLLQEW VQRQDCRHGSLVLVHHPLRQGVAHRYLSLLQQRLALPMLSWDDWHADVASAKEASTPLFLALAPIQITETLRASGVMTSL LEIELLRLGLIDLLAALP >Mature_258_residues MNSFWPGDHSSSKEFATVCDSDGMPWLQSTIKTGMTSAVSDVLDPWPLLRKHEEDGCKRALRLIVHGRAGGYVPSCVRSF ALQVAQRRGTPVLVEALTATDRHEQSADPIWLVPLLLLPGSHVREDVPLIRQRLQQQGVNTRLVPFLGAWPSWWRLLQEW VQRQDCRHGSLVLVHHPLRQGVAHRYLSLLQQRLALPMLSWDDWHADVASAKEASTPLFLALAPIQITETLRASGVMTSL LEIELLRLGLIDLLAALP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28924; Mature: 28924
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSFWPGDHSSSKEFATVCDSDGMPWLQSTIKTGMTSAVSDVLDPWPLLRKHEEDGCKRA CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHH LRLIVHGRAGGYVPSCVRSFALQVAQRRGTPVLVEALTATDRHEQSADPIWLVPLLLLPG HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC SHVREDVPLIRQRLQQQGVNTRLVPFLGAWPSWWRLLQEWVQRQDCRHGSLVLVHHPLRQ CHHHHHHHHHHHHHHHCCCCEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECHHHH GVAHRYLSLLQQRLALPMLSWDDWHADVASAKEASTPLFLALAPIQITETLRASGVMTSL HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH LEIELLRLGLIDLLAALP HHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNSFWPGDHSSSKEFATVCDSDGMPWLQSTIKTGMTSAVSDVLDPWPLLRKHEEDGCKRA CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHH LRLIVHGRAGGYVPSCVRSFALQVAQRRGTPVLVEALTATDRHEQSADPIWLVPLLLLPG HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC SHVREDVPLIRQRLQQQGVNTRLVPFLGAWPSWWRLLQEWVQRQDCRHGSLVLVHHPLRQ CHHHHHHHHHHHHHHHCCCCEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECHHHH GVAHRYLSLLQQRLALPMLSWDDWHADVASAKEASTPLFLALAPIQITETLRASGVMTSL HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH LEIELLRLGLIDLLAALP HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA