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The map label for this gene is ndhC

Identifier: 124024215

GI number: 124024215

Start: 2223387

End: 2223791

Strand: Reverse

Name: ndhC

Synonym: P9303_25261

Alternate gene names: 124024215

Gene position: 2223791-2223387 (Counterclockwise)

Preceding gene: 124024222

Following gene: 124024214

Centisome position: 82.89

GC content: 52.1

Gene sequence:

>405_bases
ATGGCAGTGAATGCCAGACTGATCAGCAAGTCGTACTTGTCCATGTTTGCGCTGCCGGGTTATGACGCTTTTCTCGGCTT
TCTGCTGGTCTCAGCAGCAGTACCGATCTTGGCGCTTGTCACCAACAAGCTCTTGGCGCCTCGCAGTCGCACCGGCGAGC
GGGAGCTGACCTATGAATCAGGGATGGAGCCCATTGGTGGTGCCTGGATTCAGTTCAACATTCGCTACTACATGTTCGCT
TTAGTTTTCGTCATCTTCGATGTGGAGACCGTTTTCCTTTATCCCTGGGCTGTGGCATTTCATCGCTTAGGTCTATTGGC
TTTCATCGAAGCCCTTATTTTTATTGCCATCCTTCTTGTTGCACTGGCTTATGCCTGGCGGAAGGGTGCCCTCGAGTGGA
GTTGA

Upstream 100 bases:

>100_bases
GTTTGATCAACTGATTCGGCTTCTGTCGAGTCTTCGGCAGGTGTGGTTTTGTCGCTCACAGCTGCACTGTCAGGTGAGAT
AACTCTATCGGCGTTAGCCC

Downstream 100 bases:

>100_bases
TTTCATGTCAGTGACCCCCTCCATCGATGCCGTACGTGACTTGCGTGCGGCGAGTTGTGGCCCTGTCGGCGCACCCAGTG
TGACCAGTGAATTGAGTGAG

Product: NADH dehydrogenase subunit A

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit 3; NADH-plastoquinone oxidoreductase subunit 3; NDH-1 subunit 3; NDH-C

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAVNARLISKSYLSMFALPGYDAFLGFLLVSAAVPILALVTNKLLAPRSRTGERELTYESGMEPIGGAWIQFNIRYYMFA
LVFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILLVALAYAWRKGALEWS

Sequences:

>Translated_134_residues
MAVNARLISKSYLSMFALPGYDAFLGFLLVSAAVPILALVTNKLLAPRSRTGERELTYESGMEPIGGAWIQFNIRYYMFA
LVFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILLVALAYAWRKGALEWS
>Mature_133_residues
AVNARLISKSYLSMFALPGYDAFLGFLLVSAAVPILALVTNKLLAPRSRTGERELTYESGMEPIGGAWIQFNIRYYMFAL
VFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILLVALAYAWRKGALEWS

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0838

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 3 (chain A)

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 3 family

Homologues:

Organism=Escherichia coli, GI1788625, Length=112, Percent_Identity=38.3928571428571, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NU3C_PROM3 (A2CCP7)

Other databases:

- EMBL:   CP000554
- RefSeq:   YP_001018522.1
- STRING:   A2CCP7
- GeneID:   4778328
- GenomeReviews:   CP000554_GR
- KEGG:   pmf:P9303_25261
- eggNOG:   COG0838
- HOGENOM:   HBG605540
- OMA:   GERELTY
- ProtClustDB:   PRK06602
- GO:   GO:0006810
- HAMAP:   MF_01394
- InterPro:   IPR023043
- InterPro:   IPR000440
- PANTHER:   PTHR11058

Pfam domain/function: PF00507 Oxidored_q4

EC number: 1.6.5.3

Molecular weight: Translated: 15074; Mature: 14943

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x170efaa4)-; HASH(0x160d14a4)-; HASH(0x16f10958)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVNARLISKSYLSMFALPGYDAFLGFLLVSAAVPILALVTNKLLAPRSRTGERELTYES
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHC
GMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILLV
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAYAWRKGALEWS
HHHHHHHCCCCCCH
>Mature Secondary Structure 
AVNARLISKSYLSMFALPGYDAFLGFLLVSAAVPILALVTNKLLAPRSRTGERELTYES
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHC
GMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFIEALIFIAILLV
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAYAWRKGALEWS
HHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA