| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is pheT [H]
Identifier: 124023184
GI number: 124023184
Start: 1274720
End: 1277167
Strand: Direct
Name: pheT [H]
Synonym: P9303_14801
Alternate gene names: 124023184
Gene position: 1274720-1277167 (Clockwise)
Preceding gene: 124023180
Following gene: 124023192
Centisome position: 47.52
GC content: 49.35
Gene sequence:
>2448_bases ATGCGGGTTTCTCTCTCCTGGCTGCAGGATCTAGTACAGCTGAATGAGACCGTCGAGAACCTCGCCGAAGGCCTGTCGAT GGCTGGATTTGAGGTTGAGGCTATTGATGATTTAGCCAGCCGTGCCGATGGCGTGGTCGTTGGGTTGGTGAAAGACCATC AACCCCACCCCAATGCAGACAAACTCAGCGTCTGTCAGGTGGATGTTGGGTCGGGTGAATGTCTTCAGATCGTCTGTGGG GCTCCAAATGTTCGGCTTGGTATACACGTACCTGTTGCCATGGTTGGTGCAACCCTCCCAGCAGTTGGAATCAAGATCAA AGCCAGTGAGCTTCGGGGGGTGCCAAGTCAAGGAATGATCTGCTCTCTATCGGAATTAGGACTGGAATCAAATGGTGATG GAATAGCCATCCTTGAAGAGATCGCTGAAAACGTTCCAGAGCTCGGCCAGCCTGTAGCTCCTCTGCTCGGACTCGATGAC ACAGTGCTTGAGTTGGCAATCACAGCCAATCGCCCCGATGGAATGTCGATGGTTGGTATCGCAAGGGAAGTCGCTGCTTT AACAGGTGCAATCCTGCAGCTTCCGCAACTTGATATGGCCCCAATCCATAAATCTTTCAAGCCTGATTCCACCAGTTCTG TGTCCATGCTGAAGGGTGGTCTTTATGGCTTAACCGCCTTAGAGAATGTAGATGGTGGATTAACTTCTCCTGCATGGTTA AAACAACGCTTGGAGCGTTCAGGATTGAAATCAGTGAATGGTGTTGTTGATATTACAAATCTGGTGATGTTGGAGCAAGG CCAGCCATTGCATGCATTTGATATTGATGCTCTCGAATTGATCACAGGTCAAACAGTTTCCGCAGAATCTTTTGGCCTTC GACAAGCAAGAAACAATGAAGTTTTTAATGGCCTAGATGGACATCAACTTGCACTGAACGAAAATTGCCAGATCGTCACC TGCCATGACATTCCTATAGCGCTTGCGGGTGTTATCGGTAGTGCTGAAAGCGGCGTGTCTGCAAAGACAAGGCGAGTATG GCTGGAATCTGCAATGTTTACCCCAACGGCCGTGAGAACGACCTGCCGAGCTGTTGGCTTGAGGACCGATGCAAGCAGTC GCTTTGAGAAAGGGTTGCCTGTTGAAATGACTTTGGCATCAGCGCGTCGAGCTGTGACACTAATGGAGGAACATCTAGGC ATTAAATCAAATGGATGTTGGGTATATGGTGAGCCCCTAAAAACTGCTGAGCCGGTAAAACTTCGCCGCGAAGCTATCCA TCGCTTACTCGGACCAATAGCTGATGAGAATGACAATAGGTATCTAGAAGACGACATTGTCGAGACTTCGTTGCTTGCTC TCGGATGCGAGTTGTCTCCTTATAACGAAGGGTGGTTGGTCATAGTTCCACCATCACGCCGTAGAGATCTCTCGCGAGAG GTTGATTTGATCGAAGAGGTGTCTCGCCTTGTTGGCTTTGATCGTTTTGAGGCCAACCTGCCAGATCCGCTTGAACCTGG TGGGCTAACGACTGCTCAAACAGCTGAACGCCGATTGAGGCAGATGTTGTGCGGAGCAGGATTGCAGGAAGTCACCACCT TGTCGCTAGTGGGTGCTGATAGTGATGAACCACAACGAATTGCAATTAGCAACCCTTTATTGGCTGAGACCAGCCACCTG CGTACCAATCTTTGGGAGGAGCATCTACGTATTTGCCAACGTAACCTCCAGTCATCGCAGCCTGGTTGTTGGTTATATGA AATAGGCAATGTCTATACAGTCACTGACGAGCTCATCAACCAACGCGCTGTTCTTGGTGGCGTGATCTGTGCAGAGCGAA GGTTTGAACGATGGAGTACAAGCGGCAAGATCAAGTCAATGACATATCACCAGGCGCGCGGTCAGCTTTCCCAAGTCTTT CAAGGGTTGAAGTTGGACATTAACGACCGTCCCCTCAAGGACAATCCTTCACTTCATCCTGGACGGTCTGCAGAGTTATT TGTCGAAGGCAAACTGCTCGGGGATTTTGGGCAGCTTCATCCAGCACTATCGGAACGTCTTGATCTACCTGAAGCAACCT ATCTATTCGCGTTGGACTTTCAGTGCATCATCCAAGCTGCGACACGCTCTAATCGATGGAACCCTATCTTCCGACCATTC CCGACAGTTCCAGCAATGGAACTTGATTTAGCTGTGATCGTTTCAAGGGAATGTAGTTGTTCAGATTTGATCCAAGCCAT CAGAAAAGCTGGTAAACCGCTGCTAGAGCATGTAGAGCTGATTGATCGTTTTGAGGGTGGACAGCTTGATCATGACTCTT GCAGTCAAGCGTTCAGGTTGCGTTATCGAAGTAAAGACAGCACTCTTAGTGAAGACAGGGTCAACCCGATTCACGAGAAG GTACGTCAAGCACTTGTAAAGCAGTTTTCTGCAGAGCTCAGGAGCTAA
Upstream 100 bases:
>100_bases GAAGCGTAGTGAAGAACTAAGATCCTACAGGGCAGCCTCACATGACTTGACGCCTTCGTTCGCTTGCTTCGTAAGATCTC TTGCGGCCTCTTGCTGATCC
Downstream 100 bases:
>100_bases TACGAATTAACAGTGCCAGACATTCGATATGCATTGTTTGTGGGAAGAAATCAATTGGTTGTAATTGATCAATCTGATAG GGTCCATTTGGGACTATCAA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 815; Mature: 815
Protein sequence:
>815_residues MRVSLSWLQDLVQLNETVENLAEGLSMAGFEVEAIDDLASRADGVVVGLVKDHQPHPNADKLSVCQVDVGSGECLQIVCG APNVRLGIHVPVAMVGATLPAVGIKIKASELRGVPSQGMICSLSELGLESNGDGIAILEEIAENVPELGQPVAPLLGLDD TVLELAITANRPDGMSMVGIAREVAALTGAILQLPQLDMAPIHKSFKPDSTSSVSMLKGGLYGLTALENVDGGLTSPAWL KQRLERSGLKSVNGVVDITNLVMLEQGQPLHAFDIDALELITGQTVSAESFGLRQARNNEVFNGLDGHQLALNENCQIVT CHDIPIALAGVIGSAESGVSAKTRRVWLESAMFTPTAVRTTCRAVGLRTDASSRFEKGLPVEMTLASARRAVTLMEEHLG IKSNGCWVYGEPLKTAEPVKLRREAIHRLLGPIADENDNRYLEDDIVETSLLALGCELSPYNEGWLVIVPPSRRRDLSRE VDLIEEVSRLVGFDRFEANLPDPLEPGGLTTAQTAERRLRQMLCGAGLQEVTTLSLVGADSDEPQRIAISNPLLAETSHL RTNLWEEHLRICQRNLQSSQPGCWLYEIGNVYTVTDELINQRAVLGGVICAERRFERWSTSGKIKSMTYHQARGQLSQVF QGLKLDINDRPLKDNPSLHPGRSAELFVEGKLLGDFGQLHPALSERLDLPEATYLFALDFQCIIQAATRSNRWNPIFRPF PTVPAMELDLAVIVSRECSCSDLIQAIRKAGKPLLEHVELIDRFEGGQLDHDSCSQAFRLRYRSKDSTLSEDRVNPIHEK VRQALVKQFSAELRS
Sequences:
>Translated_815_residues MRVSLSWLQDLVQLNETVENLAEGLSMAGFEVEAIDDLASRADGVVVGLVKDHQPHPNADKLSVCQVDVGSGECLQIVCG APNVRLGIHVPVAMVGATLPAVGIKIKASELRGVPSQGMICSLSELGLESNGDGIAILEEIAENVPELGQPVAPLLGLDD TVLELAITANRPDGMSMVGIAREVAALTGAILQLPQLDMAPIHKSFKPDSTSSVSMLKGGLYGLTALENVDGGLTSPAWL KQRLERSGLKSVNGVVDITNLVMLEQGQPLHAFDIDALELITGQTVSAESFGLRQARNNEVFNGLDGHQLALNENCQIVT CHDIPIALAGVIGSAESGVSAKTRRVWLESAMFTPTAVRTTCRAVGLRTDASSRFEKGLPVEMTLASARRAVTLMEEHLG IKSNGCWVYGEPLKTAEPVKLRREAIHRLLGPIADENDNRYLEDDIVETSLLALGCELSPYNEGWLVIVPPSRRRDLSRE VDLIEEVSRLVGFDRFEANLPDPLEPGGLTTAQTAERRLRQMLCGAGLQEVTTLSLVGADSDEPQRIAISNPLLAETSHL RTNLWEEHLRICQRNLQSSQPGCWLYEIGNVYTVTDELINQRAVLGGVICAERRFERWSTSGKIKSMTYHQARGQLSQVF QGLKLDINDRPLKDNPSLHPGRSAELFVEGKLLGDFGQLHPALSERLDLPEATYLFALDFQCIIQAATRSNRWNPIFRPF PTVPAMELDLAVIVSRECSCSDLIQAIRKAGKPLLEHVELIDRFEGGQLDHDSCSQAFRLRYRSKDSTLSEDRVNPIHEK VRQALVKQFSAELRS >Mature_815_residues MRVSLSWLQDLVQLNETVENLAEGLSMAGFEVEAIDDLASRADGVVVGLVKDHQPHPNADKLSVCQVDVGSGECLQIVCG APNVRLGIHVPVAMVGATLPAVGIKIKASELRGVPSQGMICSLSELGLESNGDGIAILEEIAENVPELGQPVAPLLGLDD TVLELAITANRPDGMSMVGIAREVAALTGAILQLPQLDMAPIHKSFKPDSTSSVSMLKGGLYGLTALENVDGGLTSPAWL KQRLERSGLKSVNGVVDITNLVMLEQGQPLHAFDIDALELITGQTVSAESFGLRQARNNEVFNGLDGHQLALNENCQIVT CHDIPIALAGVIGSAESGVSAKTRRVWLESAMFTPTAVRTTCRAVGLRTDASSRFEKGLPVEMTLASARRAVTLMEEHLG IKSNGCWVYGEPLKTAEPVKLRREAIHRLLGPIADENDNRYLEDDIVETSLLALGCELSPYNEGWLVIVPPSRRRDLSRE VDLIEEVSRLVGFDRFEANLPDPLEPGGLTTAQTAERRLRQMLCGAGLQEVTTLSLVGADSDEPQRIAISNPLLAETSHL RTNLWEEHLRICQRNLQSSQPGCWLYEIGNVYTVTDELINQRAVLGGVICAERRFERWSTSGKIKSMTYHQARGQLSQVF QGLKLDINDRPLKDNPSLHPGRSAELFVEGKLLGDFGQLHPALSERLDLPEATYLFALDFQCIIQAATRSNRWNPIFRPF PTVPAMELDLAVIVSRECSCSDLIQAIRKAGKPLLEHVELIDRFEGGQLDHDSCSQAFRLRYRSKDSTLSEDRVNPIHEK VRQALVKQFSAELRS
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=831, Percent_Identity=32.6113116726835, Blast_Score=374, Evalue=1e-104,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 89100; Mature: 89100
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVSLSWLQDLVQLNETVENLAEGLSMAGFEVEAIDDLASRADGVVVGLVKDHQPHPNAD CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCC KLSVCQVDVGSGECLQIVCGAPNVRLGIHVPVAMVGATLPAVGIKIKASELRGVPSQGMI CEEEEEEECCCCCEEEEEECCCCEEEEEECHHHHHHCCCCCCCEEEEHHHHCCCCCCCCE CSLSELGLESNGDGIAILEEIAENVPELGQPVAPLLGLDDTVLELAITANRPDGMSMVGI EEHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHEEEEEECCCCCCCHHHHH AREVAALTGAILQLPQLDMAPIHKSFKPDSTSSVSMLKGGLYGLTALENVDGGLTSPAWL HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCHHHH KQRLERSGLKSVNGVVDITNLVMLEQGQPLHAFDIDALELITGQTVSAESFGLRQARNNE HHHHHHCCCHHHCCCEEHHHEEEECCCCCCEEECCCHHHHHCCCCCCCHHHCHHHHCCCC VFNGLDGHQLALNENCQIVTCHDIPIALAGVIGSAESGVSAKTRRVWLESAMFTPTAVRT CCCCCCCCEEEECCCCCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHH TCRAVGLRTDASSRFEKGLPVEMTLASARRAVTLMEEHLGIKSNGCWVYGEPLKTAEPVK HHHHHCCCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHH LRREAIHRLLGPIADENDNRYLEDDIVETSLLALGCELSPYNEGWLVIVPPSRRRDLSRE HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHH VDLIEEVSRLVGFDRFEANLPDPLEPGGLTTAQTAERRLRQMLCGAGLQEVTTLSLVGAD HHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHEEEEEECC SDEPQRIAISNPLLAETSHLRTNLWEEHLRICQRNLQSSQPGCWLYEIGNVYTVTDELIN CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEHHHHHH QRAVLGGVICAERRFERWSTSGKIKSMTYHQARGQLSQVFQGLKLDINDRPLKDNPSLHP HHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCC GRSAELFVEGKLLGDFGQLHPALSERLDLPEATYLFALDFQCIIQAATRSNRWNPIFRPF CCCCEEEEEEEEECCHHHHCHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCC PTVPAMELDLAVIVSRECSCSDLIQAIRKAGKPLLEHVELIDRFEGGQLDHDSCSQAFRL CCCCCHHCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH RYRSKDSTLSEDRVNPIHEKVRQALVKQFSAELRS HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRVSLSWLQDLVQLNETVENLAEGLSMAGFEVEAIDDLASRADGVVVGLVKDHQPHPNAD CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCC KLSVCQVDVGSGECLQIVCGAPNVRLGIHVPVAMVGATLPAVGIKIKASELRGVPSQGMI CEEEEEEECCCCCEEEEEECCCCEEEEEECHHHHHHCCCCCCCEEEEHHHHCCCCCCCCE CSLSELGLESNGDGIAILEEIAENVPELGQPVAPLLGLDDTVLELAITANRPDGMSMVGI EEHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHEEEEEECCCCCCCHHHHH AREVAALTGAILQLPQLDMAPIHKSFKPDSTSSVSMLKGGLYGLTALENVDGGLTSPAWL HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCHHHH KQRLERSGLKSVNGVVDITNLVMLEQGQPLHAFDIDALELITGQTVSAESFGLRQARNNE HHHHHHCCCHHHCCCEEHHHEEEECCCCCCEEECCCHHHHHCCCCCCCHHHCHHHHCCCC VFNGLDGHQLALNENCQIVTCHDIPIALAGVIGSAESGVSAKTRRVWLESAMFTPTAVRT CCCCCCCCEEEECCCCCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHH TCRAVGLRTDASSRFEKGLPVEMTLASARRAVTLMEEHLGIKSNGCWVYGEPLKTAEPVK HHHHHCCCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHH LRREAIHRLLGPIADENDNRYLEDDIVETSLLALGCELSPYNEGWLVIVPPSRRRDLSRE HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHH VDLIEEVSRLVGFDRFEANLPDPLEPGGLTTAQTAERRLRQMLCGAGLQEVTTLSLVGAD HHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHEEEEEECC SDEPQRIAISNPLLAETSHLRTNLWEEHLRICQRNLQSSQPGCWLYEIGNVYTVTDELIN CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEHHHHHH QRAVLGGVICAERRFERWSTSGKIKSMTYHQARGQLSQVFQGLKLDINDRPLKDNPSLHP HHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCC GRSAELFVEGKLLGDFGQLHPALSERLDLPEATYLFALDFQCIIQAATRSNRWNPIFRPF CCCCEEEEEEEEECCHHHHCHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCC PTVPAMELDLAVIVSRECSCSDLIQAIRKAGKPLLEHVELIDRFEGGQLDHDSCSQAFRL CCCCCHHCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH RYRSKDSTLSEDRVNPIHEKVRQALVKQFSAELRS HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12917642 [H]