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The map label for this gene is pds [H]

Identifier: 124022890

GI number: 124022890

Start: 1038744

End: 1040375

Strand: Direct

Name: pds [H]

Synonym: P9303_11831

Alternate gene names: 124022890

Gene position: 1038744-1040375 (Clockwise)

Preceding gene: 124022888

Following gene: 124022892

Centisome position: 38.72

GC content: 62.5

Gene sequence:

>1632_bases
ATGGCCGAAGGTTTTCCGGGTAAAAAGCAATCTCATGCGGTTGTCATCGGGGCCGGCTGGGCTGGCTGGGGTGCGGCCAA
GGCACTCTGCGAAGCGGGTGTTCGCGTGACCCTGATGGATGGGATGGCGGATCCAACCGGCAGCCAGCCCCTCACCACGC
CAAGCGGCAAACCGTTCGAGGCAGGCACCCGGGGGTTCTGGAAGGATTATCCCAACATCAATGCCCTGACGGCAGAGCTC
GGGCTCGGCTCGATCTTCACGGAGTTCACCACTAGTGCGTTCTGGTCACCCGAAGGCCTGGAGGCGACGGCTCCTGTCTT
CGGTGACGCTCCGCTGTGGCCGAGTCCCCTGGGTCAGGTTGCTGCAACGATCAATAACTTCAAGCGCCTGCCTGTTGCTG
ATCGGCTCAGCATCGCCGGCCTGCTCTACGCCATGCTCGATCTGAACCGCAGCGATGCGGTATACAGGAGCTACGACGCG
ATCGATGCGCTGACGCTGTTTAGACAGCTCAGGATCAGTGATCGCATGATCGATGATTTCCTGCGGCCCACGTTGCTGGT
GGGGCTGTTTAAGCCGCCGGAGGAGCTGTCGGCCGCTGTCACGATGGAGCTCCTCTACTACTACGCCCTGGCGCATCAGG
ATTCCTTCGATGTGCGTTGGATCAGGTCGAAAAGCATCGCCGAACAGCTGATTGCGCCGCTCAGTGAGCGGCTGCAGGAG
CAGCATCAGCTCGAGGTGCTGGGCGGCACCCTGGCCACCCGGCTGAACATCTCGCCGGAGACTCAGGCCATCTGCTCGGT
GGGAACCCGTTCCGTAACAACTGGGAGCACCGGTTTAATCGAGGATGTCGATGCCGTGGTGCTTGCCGTGAGTGCCAAAG
GAATGGGTGCCTTGATGGCGCAATCCCCGCAGTGCGGCGCGCTGGCGCCGGAGCTTGTGCGTGCCGCCACGCTCGGATCG
ATCGATGTGGTGTCGATCCGTCTGTGGCTGGATCGCACCGTGCCGGTCGCCGATCCCGCCAATGTGTTCTCACGTTTCAG
CGCACTGAGAGGCGCCGGCGCCACCTTCTTCATGTTGGATCAACTGCAGCGGGAGTCGGAGCAGGCTCTCTGGGGTGATC
AGCCAGCGCAGGGTTCGGTGATCGCCAGCGATTTCTACAACGCCTCGGCCATCGTCGAGCTGAGCGATCAGGAGATCGTC
GACTGCCTGATGCAGGATCTGCTGCCCATAGCGCAGCCTGCTTTCAGGGGGGCCAGGGTCGTGGATCAGGAGGTGCGGCG
TTATCCGGGTTCGGTGTCTCTCTTCTCGCCGGGAAGTTTCAGCAAGCGGCCACCAATGGAGACGTCACTGGCTTCGGTGG
TCTGCGCCGGCGACTGGGTGCGGATGGGCGAGAAAGAACATGGTGCTAAAGGCCTTTGTCAGGAACGCGCCTACGTGTGT
GGTCTGGAAGCGGGCAACTCACTGCTCAGGCGCGGGATCGTGAGGGGCGCCGACCTGCCCACGGCCCTGCAGCACTCTGT
GATCCCCATCCGCGCTGATGAACCGCAGGTGCTGCTCGGGCGTGCCCTTAACAAGCTGGTGATGGATCCCCTCGAGGCCT
TCGGGATCCAGTGGCCTTGGTTGGCTAGCTAG

Upstream 100 bases:

>100_bases
CGAAGACTTCCTTCAAGAGTTGCCTTTGTCACAAGGTGGCGCAGGAAGCCCATGGTCCATGAGTTCATCTCTTTAGCTTG
GGCCGATGTAAAACAGCTTC

Downstream 100 bases:

>100_bases
CTAGCTAGCGATTCTCAAGGGATTGGCGATGACGATTCAACAGGCTGAGATTCGTTCAGTATCACGGCATCATGGCGCCG
CTTTCATCAACGGCGCGTAC

Product: zeta-carotene desaturase-like protein

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 543; Mature: 542

Protein sequence:

>543_residues
MAEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMADPTGSQPLTTPSGKPFEAGTRGFWKDYPNINALTAEL
GLGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQVAATINNFKRLPVADRLSIAGLLYAMLDLNRSDAVYRSYDA
IDALTLFRQLRISDRMIDDFLRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLIAPLSERLQE
QHQLEVLGGTLATRLNISPETQAICSVGTRSVTTGSTGLIEDVDAVVLAVSAKGMGALMAQSPQCGALAPELVRAATLGS
IDVVSIRLWLDRTVPVADPANVFSRFSALRGAGATFFMLDQLQRESEQALWGDQPAQGSVIASDFYNASAIVELSDQEIV
DCLMQDLLPIAQPAFRGARVVDQEVRRYPGSVSLFSPGSFSKRPPMETSLASVVCAGDWVRMGEKEHGAKGLCQERAYVC
GLEAGNSLLRRGIVRGADLPTALQHSVIPIRADEPQVLLGRALNKLVMDPLEAFGIQWPWLAS

Sequences:

>Translated_543_residues
MAEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMADPTGSQPLTTPSGKPFEAGTRGFWKDYPNINALTAEL
GLGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQVAATINNFKRLPVADRLSIAGLLYAMLDLNRSDAVYRSYDA
IDALTLFRQLRISDRMIDDFLRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLIAPLSERLQE
QHQLEVLGGTLATRLNISPETQAICSVGTRSVTTGSTGLIEDVDAVVLAVSAKGMGALMAQSPQCGALAPELVRAATLGS
IDVVSIRLWLDRTVPVADPANVFSRFSALRGAGATFFMLDQLQRESEQALWGDQPAQGSVIASDFYNASAIVELSDQEIV
DCLMQDLLPIAQPAFRGARVVDQEVRRYPGSVSLFSPGSFSKRPPMETSLASVVCAGDWVRMGEKEHGAKGLCQERAYVC
GLEAGNSLLRRGIVRGADLPTALQHSVIPIRADEPQVLLGRALNKLVMDPLEAFGIQWPWLAS
>Mature_542_residues
AEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMADPTGSQPLTTPSGKPFEAGTRGFWKDYPNINALTAELG
LGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQVAATINNFKRLPVADRLSIAGLLYAMLDLNRSDAVYRSYDAI
DALTLFRQLRISDRMIDDFLRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLIAPLSERLQEQ
HQLEVLGGTLATRLNISPETQAICSVGTRSVTTGSTGLIEDVDAVVLAVSAKGMGALMAQSPQCGALAPELVRAATLGSI
DVVSIRLWLDRTVPVADPANVFSRFSALRGAGATFFMLDQLQRESEQALWGDQPAQGSVIASDFYNASAIVELSDQEIVD
CLMQDLLPIAQPAFRGARVVDQEVRRYPGSVSLFSPGSFSKRPPMETSLASVVCAGDWVRMGEKEHGAKGLCQERAYVCG
LEAGNSLLRRGIVRGADLPTALQHSVIPIRADEPQVLLGRALNKLVMDPLEAFGIQWPWLAS

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 58567; Mature: 58435

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMADPTGSQPLTTPSGKPFE
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC
AGTRGFWKDYPNINALTAELGLGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQV
CCCCCHHHCCCCCCEEEHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
AATINNFKRLPVADRLSIAGLLYAMLDLNRSDAVYRSYDAIDALTLFRQLRISDRMIDDF
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLIAPLSERLQE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
QHQLEVLGGTLATRLNISPETQAICSVGTRSVTTGSTGLIEDVDAVVLAVSAKGMGALMA
HHHHHHHCCHHHEEECCCCHHHHHHHCCCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHC
QSPQCGALAPELVRAATLGSIDVVSIRLWLDRTVPVADPANVFSRFSALRGAGATFFMLD
CCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
QLQRESEQALWGDQPAQGSVIASDFYNASAIVELSDQEIVDCLMQDLLPIAQPAFRGARV
HHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCHHH
VDQEVRRYPGSVSLFSPGSFSKRPPMETSLASVVCAGDWVRMGEKEHGAKGLCQERAYVC
HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCHHHHCCCHHCCCCHHHHHHHEEE
GLEAGNSLLRRGIVRGADLPTALQHSVIPIRADEPQVLLGRALNKLVMDPLEAFGIQWPW
ECHHHHHHHHHHHHCCCCCCHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
LAS
CCC
>Mature Secondary Structure 
AEGFPGKKQSHAVVIGAGWAGWGAAKALCEAGVRVTLMDGMADPTGSQPLTTPSGKPFE
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC
AGTRGFWKDYPNINALTAELGLGSIFTEFTTSAFWSPEGLEATAPVFGDAPLWPSPLGQV
CCCCCHHHCCCCCCEEEHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
AATINNFKRLPVADRLSIAGLLYAMLDLNRSDAVYRSYDAIDALTLFRQLRISDRMIDDF
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRPTLLVGLFKPPEELSAAVTMELLYYYALAHQDSFDVRWIRSKSIAEQLIAPLSERLQE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
QHQLEVLGGTLATRLNISPETQAICSVGTRSVTTGSTGLIEDVDAVVLAVSAKGMGALMA
HHHHHHHCCHHHEEECCCCHHHHHHHCCCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHC
QSPQCGALAPELVRAATLGSIDVVSIRLWLDRTVPVADPANVFSRFSALRGAGATFFMLD
CCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
QLQRESEQALWGDQPAQGSVIASDFYNASAIVELSDQEIVDCLMQDLLPIAQPAFRGARV
HHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCHHH
VDQEVRRYPGSVSLFSPGSFSKRPPMETSLASVVCAGDWVRMGEKEHGAKGLCQERAYVC
HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCHHHHCCCHHCCCCHHHHHHHEEE
GLEAGNSLLRRGIVRGADLPTALQHSVIPIRADEPQVLLGRALNKLVMDPLEAFGIQWPW
ECHHHHHHHHHHHHCCCCCCHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
LAS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]