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The map label for this gene is yocR [H]

Identifier: 124022575

GI number: 124022575

Start: 783310

End: 784644

Strand: Direct

Name: yocR [H]

Synonym: P9303_08661

Alternate gene names: 124022575

Gene position: 783310-784644 (Clockwise)

Preceding gene: 124022572

Following gene: 124022580

Centisome position: 29.2

GC content: 57.98

Gene sequence:

>1335_bases
ATGGCAGTTCGGGAACATTGGCGATCGGGTGTGGGCTTTGTGCTTGCCGCGGCAGGCAGTGCAGTGGGGCTGGGCAATCT
CTGGGGCTTCGCCTATCGATCTTCTCAGGGGGGTGGGGCGGCGTTTCTGCTCCTCTATGTCGTAATTGTGTTGGTGGTCT
GCCTGCCGGTGTTGGTGGCGGAGATGGTGCTGGGGCGTAGCACGGGCCAAAGCCCTTTGATGGCCCCTGTACAGGCGGCA
GGATCTACTTGGCGTCCAATGGGCTGGCTGTTTGTGGTCGCATCCTGTGGAATCCTGGCCTTTTATGCCGTGCTGATGGG
CTGGACGGCCCACACCCTGTTTCATGCCCTATTCGTTGGTCTGCCAGCGGATATGGCGGCGGCAGAATCGTTTTTTGCCT
CGGTGAGTCGCGGCAATAGTGCTGTTCTGGGTCAGGGAATCAGCCTCGTGCTTACAGCTGCCGTTGTTGCTGCCGGCGTG
CAGGGAGGCATTGAGCGTTTGTCTCGTTGGGCTTTGCCCTTGCTGTTTTTGCTCCTGATTGCACTATCGATCTGGGCGAC
CACATTGCCTGGAGCTGTCGGCGGATACCAGACGTTTCTGCTCAGTTGGGATCCTGCTCAGCTGGTGAACCCCACCACCA
TTCGTAACGCTTTTACCCAGGCCTTCTTCTCCATTGGCGCTGGCATTGGCTGCATCTTGGCCTATGCGGCCTATCTCGAT
CGCAGCAATCGATTGCCTCAAGAAGCGATTGCCGTGGTTGGCCTGGATACGGCGGTGGGCTTGCTTGCGGGAATGATCAC
GTTTCCTGTGGTGGTCAGCTTCGGTCTGCAGGACACGATCAGCGCCTCCACCGTGGGCGCTCTGTTTCTGGCGATCCCCA
CAGGACTTGCCTCCCTTGGAGATACTGGTCGCTTGGTGGCGGTGCTCTTCTTTTCTTTGGCCTATCTGGCGGCTATCACT
TCATCGGTGTCCTTGCTGGAAGTTCCTGTGGCATCGCTGATGGATCGTTTGGGTTGCTCTCGTCGACGGGCGGCCTGGCT
GATGGCGTTGCTGATTTTTGTGGTGGGTTTGCCGGCTGCGGTGTCGATCCCGGTGCTGGAGGTGATGGATTCGGTGTTTG
GTGGTGTGCTTTTGATCCTTGGTGGATTTCTGCTGGCCCTGCTGCTGGGTTGGGTGGTGCCGAAACGGTTTCGCGACGAC
CTTCATGAATCAGGTACATCCAGGCGACTGATCCGTTTGATGTTGTTTTTTCTGCGGTGGGTGTCACCACCTGTTGTGGC
CTTTGGTTTGATCGTTAGCGTCGTGGATCTGCTGCAGACATGGACAGGGACCTGA

Upstream 100 bases:

>100_bases
CCAGCACGCTGATGGCTTTCACACTGTTCCGGCAGTTGAAGCCAGTCTCCCACTAGATGGCCAGACACTGGCAAGCTTGT
CTTAACAAGGAGCTCCAGAC

Downstream 100 bases:

>100_bases
TCAAGCGTTCACGGTTGGGGCTTATGGACCCAGTTCTCTAAAGCAGAGGTGGGCATTGTCGATTTAGCTGAAGCGTTTGT
ATCCCTAGAGCTGGCGAAGC

Product: sodium-dependent transporter NSS family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MAVREHWRSGVGFVLAAAGSAVGLGNLWGFAYRSSQGGGAAFLLLYVVIVLVVCLPVLVAEMVLGRSTGQSPLMAPVQAA
GSTWRPMGWLFVVASCGILAFYAVLMGWTAHTLFHALFVGLPADMAAAESFFASVSRGNSAVLGQGISLVLTAAVVAAGV
QGGIERLSRWALPLLFLLLIALSIWATTLPGAVGGYQTFLLSWDPAQLVNPTTIRNAFTQAFFSIGAGIGCILAYAAYLD
RSNRLPQEAIAVVGLDTAVGLLAGMITFPVVVSFGLQDTISASTVGALFLAIPTGLASLGDTGRLVAVLFFSLAYLAAIT
SSVSLLEVPVASLMDRLGCSRRRAAWLMALLIFVVGLPAAVSIPVLEVMDSVFGGVLLILGGFLLALLLGWVVPKRFRDD
LHESGTSRRLIRLMLFFLRWVSPPVVAFGLIVSVVDLLQTWTGT

Sequences:

>Translated_444_residues
MAVREHWRSGVGFVLAAAGSAVGLGNLWGFAYRSSQGGGAAFLLLYVVIVLVVCLPVLVAEMVLGRSTGQSPLMAPVQAA
GSTWRPMGWLFVVASCGILAFYAVLMGWTAHTLFHALFVGLPADMAAAESFFASVSRGNSAVLGQGISLVLTAAVVAAGV
QGGIERLSRWALPLLFLLLIALSIWATTLPGAVGGYQTFLLSWDPAQLVNPTTIRNAFTQAFFSIGAGIGCILAYAAYLD
RSNRLPQEAIAVVGLDTAVGLLAGMITFPVVVSFGLQDTISASTVGALFLAIPTGLASLGDTGRLVAVLFFSLAYLAAIT
SSVSLLEVPVASLMDRLGCSRRRAAWLMALLIFVVGLPAAVSIPVLEVMDSVFGGVLLILGGFLLALLLGWVVPKRFRDD
LHESGTSRRLIRLMLFFLRWVSPPVVAFGLIVSVVDLLQTWTGT
>Mature_443_residues
AVREHWRSGVGFVLAAAGSAVGLGNLWGFAYRSSQGGGAAFLLLYVVIVLVVCLPVLVAEMVLGRSTGQSPLMAPVQAAG
STWRPMGWLFVVASCGILAFYAVLMGWTAHTLFHALFVGLPADMAAAESFFASVSRGNSAVLGQGISLVLTAAVVAAGVQ
GGIERLSRWALPLLFLLLIALSIWATTLPGAVGGYQTFLLSWDPAQLVNPTTIRNAFTQAFFSIGAGIGCILAYAAYLDR
SNRLPQEAIAVVGLDTAVGLLAGMITFPVVVSFGLQDTISASTVGALFLAIPTGLASLGDTGRLVAVLFFSLAYLAAITS
SVSLLEVPVASLMDRLGCSRRRAAWLMALLIFVVGLPAAVSIPVLEVMDSVFGGVLLILGGFLLALLLGWVVPKRFRDDL
HESGTSRRLIRLMLFFLRWVSPPVVAFGLIVSVVDLLQTWTGT

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=463, Percent_Identity=25.7019438444924, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI4507041, Length=487, Percent_Identity=24.2299794661191, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI188528618, Length=482, Percent_Identity=25.103734439834, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI289191351, Length=495, Percent_Identity=22.6262626262626, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI4557046, Length=495, Percent_Identity=22.6262626262626, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI289191377, Length=495, Percent_Identity=22.8282828282828, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI7657587, Length=465, Percent_Identity=24.7311827956989, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI171184408, Length=462, Percent_Identity=24.4588744588745, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI171184406, Length=462, Percent_Identity=24.4588744588745, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI171184404, Length=462, Percent_Identity=24.4588744588745, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI11181770, Length=317, Percent_Identity=25.5520504731861, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI12408638, Length=291, Percent_Identity=25.7731958762887, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI33354281, Length=303, Percent_Identity=24.7524752475248, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI58219014, Length=304, Percent_Identity=24.3421052631579, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI197276623, Length=342, Percent_Identity=23.3918128654971, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI54607094, Length=342, Percent_Identity=23.3918128654971, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI194018524, Length=305, Percent_Identity=25.9016393442623, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI289191353, Length=280, Percent_Identity=23.9285714285714, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI197276625, Length=119, Percent_Identity=32.7731092436975, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17555248, Length=425, Percent_Identity=23.2941176470588, Blast_Score=97, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17554804, Length=447, Percent_Identity=24.6085011185682, Blast_Score=95, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17569475, Length=410, Percent_Identity=25.609756097561, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI133952791, Length=174, Percent_Identity=28.1609195402299, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17136952, Length=444, Percent_Identity=24.5495495495495, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI281364394, Length=444, Percent_Identity=24.5495495495495, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI28574704, Length=444, Percent_Identity=24.5495495495495, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI17136950, Length=444, Percent_Identity=24.5495495495495, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI28574702, Length=444, Percent_Identity=24.5495495495495, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24652942, Length=404, Percent_Identity=25.990099009901, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI45551088, Length=404, Percent_Identity=25.990099009901, Blast_Score=108, Evalue=8e-24,
Organism=Drosophila melanogaster, GI19921936, Length=402, Percent_Identity=26.3681592039801, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24661428, Length=383, Percent_Identity=26.1096605744125, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI45550877, Length=475, Percent_Identity=23.3684210526316, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI281365034, Length=410, Percent_Identity=24.6341463414634, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI45551183, Length=449, Percent_Identity=23.6080178173719, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI281363702, Length=403, Percent_Identity=24.8138957816377, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24582567, Length=379, Percent_Identity=26.1213720316623, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24639853, Length=485, Percent_Identity=25.979381443299, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24762620, Length=423, Percent_Identity=24.3498817966903, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI281363700, Length=341, Percent_Identity=24.9266862170088, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24639514, Length=508, Percent_Identity=22.6377952755905, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI221329674, Length=508, Percent_Identity=22.6377952755905, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24639516, Length=528, Percent_Identity=22.7272727272727, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI281364136, Length=473, Percent_Identity=22.4101479915433, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI19921352, Length=190, Percent_Identity=26.8421052631579, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24584353, Length=190, Percent_Identity=26.8421052631579, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24654186, Length=239, Percent_Identity=25.5230125523013, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 46715; Mature: 46584

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVREHWRSGVGFVLAAAGSAVGLGNLWGFAYRSSQGGGAAFLLLYVVIVLVVCLPVLVA
CCCHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EMVLGRSTGQSPLMAPVQAAGSTWRPMGWLFVVASCGILAFYAVLMGWTAHTLFHALFVG
HHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPADMAAAESFFASVSRGNSAVLGQGISLVLTAAVVAAGVQGGIERLSRWALPLLFLLLI
CCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSIWATTLPGAVGGYQTFLLSWDPAQLVNPTTIRNAFTQAFFSIGAGIGCILAYAAYLD
HHHHHHHHCCCCCCCHHHHEEECCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
RSNRLPQEAIAVVGLDTAVGLLAGMITFPVVVSFGLQDTISASTVGALFLAIPTGLASLG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
DTGRLVAVLFFSLAYLAAITSSVSLLEVPVASLMDRLGCSRRRAAWLMALLIFVVGLPAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH
VSIPVLEVMDSVFGGVLLILGGFLLALLLGWVVPKRFRDDLHESGTSRRLIRLMLFFLRW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHH
VSPPVVAFGLIVSVVDLLQTWTGT
CCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVREHWRSGVGFVLAAAGSAVGLGNLWGFAYRSSQGGGAAFLLLYVVIVLVVCLPVLVA
CCHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EMVLGRSTGQSPLMAPVQAAGSTWRPMGWLFVVASCGILAFYAVLMGWTAHTLFHALFVG
HHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPADMAAAESFFASVSRGNSAVLGQGISLVLTAAVVAAGVQGGIERLSRWALPLLFLLLI
CCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSIWATTLPGAVGGYQTFLLSWDPAQLVNPTTIRNAFTQAFFSIGAGIGCILAYAAYLD
HHHHHHHHCCCCCCCHHHHEEECCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
RSNRLPQEAIAVVGLDTAVGLLAGMITFPVVVSFGLQDTISASTVGALFLAIPTGLASLG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
DTGRLVAVLFFSLAYLAAITSSVSLLEVPVASLMDRLGCSRRRAAWLMALLIFVVGLPAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH
VSIPVLEVMDSVFGGVLLILGGFLLALLLGWVVPKRFRDDLHESGTSRRLIRLMLFFLRW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHH
VSPPVVAFGLIVSVVDLLQTWTGT
CCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]