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The map label for this gene is atpD [H]

Identifier: 124022212

GI number: 124022212

Start: 493629

End: 495227

Strand: Reverse

Name: atpD [H]

Synonym: P9303_05021

Alternate gene names: 124022212

Gene position: 495227-493629 (Counterclockwise)

Preceding gene: 124022215

Following gene: 124022211

Centisome position: 18.46

GC content: 55.78

Gene sequence:

>1599_bases
ATGCTGTGCCGACTAGTCGATACCTGTGCGGGTCACCGAACCCTGAGAAGATCTCGCCATGCAGTGGTAATGTTGCGCCG
CTCTGTAAGGGCATGCGTTCGACACGCAACCCCTGCAAAACTCTATTTTCTTATGGCCGCTGCAGCTACCGCCACCGCTG
GCACCAAGGGCGTTGTTCGCCAGGTGATTGGCCCGGTTCTGGATGTGGAATTCCCTGCCGGCAAGCTGCCCAAAATCCTC
AATGCCCTTCGTATTGATGGCAAGAACCCATCCGGTCAGCACATTGCCATCACTGCCGAAGTGCAGCAGCTCCTCGGCGA
TCATCGAGTAAGGGCAGTGGCAATGAGCAGCACCGATGGTCTGGTTCGTGGCATGGAAGCCCTCGACACCGGCTCTGCAA
TTTCCGTGCCCGTTGGTGAAGCCACTCTGGGCAGGATCTTCAACGTGCTCGGCGAACCAGTTGATGAGCAGGGTCCTGTT
ACAACCGATGCAACTGCTCCGATTCACCGGCCAGCGCCAAAACTCACTGAGCTAGAGACCAAACCAACAGTTTTTGAAAC
TGGCATCAAGGTGATTGATCTCTTGGCTCCCTACCGTCAAGGCGGCAAGGTTGGCCTCTTCGGTGGTGCCGGTGTGGGCA
AGACCGTGCTGATTCAGGAGCTGATCAATAACATCGCCAAAGAGCACGGTGGTGTGTCTGTCTTTGGTGGGGTGGGCGAG
CGTACCCGTGAAGGCAACGACCTCTACGAGGAATTCAAAGAATCCGGAGTGATCAACTCCGACGACCTGTCGAAGTCGAA
GGTAGCTCTTTGCTTCGGGCAGATGAATGAGCCCCCTGGCGCCCGGATGCGCGTGGGTCTTTCAGCTCTCACCATGGCTG
AGCACTTCCGCGACGTGAACAAGCAAGACGTGCTGCTGTTCATCGACAACATCTTCCGTTTTGTGCAGGCCGGATCAGAA
GTCTCTGCTCTATTGGGTCGCATGCCTTCCGCCGTGGGTTACCAGCCCACCCTTGGCACCGATGTTGGTGCACTTCAAGA
GCGCATCACATCAACCCTAGAGGGATCGATTACCTCGATTCAGGCCGTCTACGTTCCCGCAGATGACCTCACCGACCCCG
CACCAGCCACAACATTTGCCCACTTAGACGCCACAACTGTGCTGGCTCGTGCATTGGCCGCCAAGGGCATTTACCCGGCT
GTGGATCCTTTGGATTCCACCAGCACCATGCTTCAGCCATCAGTTGTTGGCGATGAGCATTACCGCACAGCACGAAGCGT
GCAGGCCACACTGCAGCGCTACAAGGAACTGCAAGACATCATTGCCATCCTTGGTCTCGACGAACTCTCAGAAGATGATC
GCCGCACAGTAGATCGTGCCCGCAAGATTGAGAAGTTCCTTTCCCAGCCCTTCTTTGTCGCCGAGATTTTTACCGGCATG
TCCGGCAAGTACGTCAAGCTGGAAGAAACCATCGCCGGCTTCAATATGATCCTGGCTGGTGAACTAGACCATCTACCTGA
GCAAGCCTTTTACCTGGTTGGCAACATCGACGAGGTCAAGGCTAAGGCCGAGAAGATAGCTTCAGAAGCAAAGGGTTAA

Upstream 100 bases:

>100_bases
GCCATGGGTGTATTGAAAGAGCAAGAACAGGGCGCCGAAGCACCGCATAACGACCTGGAGTAGCACTCGTGGCCATTGAG
TGCCAACCCTATGTGTGTTG

Downstream 100 bases:

>100_bases
AGCCCAGCGGGGAGTGAGACATCTCTCCGCTGATCACTTTCATCTCCATTCAGTTTCTCCACGTCAAACCCAAGCCTGCG
AACCATGTCTCTCACCCTCC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MLCRLVDTCAGHRTLRRSRHAVVMLRRSVRACVRHATPAKLYFLMAAAATATAGTKGVVRQVIGPVLDVEFPAGKLPKIL
NALRIDGKNPSGQHIAITAEVQQLLGDHRVRAVAMSSTDGLVRGMEALDTGSAISVPVGEATLGRIFNVLGEPVDEQGPV
TTDATAPIHRPAPKLTELETKPTVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGE
RTREGNDLYEEFKESGVINSDDLSKSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSE
VSALLGRMPSAVGYQPTLGTDVGALQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPA
VDPLDSTSTMLQPSVVGDEHYRTARSVQATLQRYKELQDIIAILGLDELSEDDRRTVDRARKIEKFLSQPFFVAEIFTGM
SGKYVKLEETIAGFNMILAGELDHLPEQAFYLVGNIDEVKAKAEKIASEAKG

Sequences:

>Translated_532_residues
MLCRLVDTCAGHRTLRRSRHAVVMLRRSVRACVRHATPAKLYFLMAAAATATAGTKGVVRQVIGPVLDVEFPAGKLPKIL
NALRIDGKNPSGQHIAITAEVQQLLGDHRVRAVAMSSTDGLVRGMEALDTGSAISVPVGEATLGRIFNVLGEPVDEQGPV
TTDATAPIHRPAPKLTELETKPTVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGE
RTREGNDLYEEFKESGVINSDDLSKSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSE
VSALLGRMPSAVGYQPTLGTDVGALQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPA
VDPLDSTSTMLQPSVVGDEHYRTARSVQATLQRYKELQDIIAILGLDELSEDDRRTVDRARKIEKFLSQPFFVAEIFTGM
SGKYVKLEETIAGFNMILAGELDHLPEQAFYLVGNIDEVKAKAEKIASEAKG
>Mature_532_residues
MLCRLVDTCAGHRTLRRSRHAVVMLRRSVRACVRHATPAKLYFLMAAAATATAGTKGVVRQVIGPVLDVEFPAGKLPKIL
NALRIDGKNPSGQHIAITAEVQQLLGDHRVRAVAMSSTDGLVRGMEALDTGSAISVPVGEATLGRIFNVLGEPVDEQGPV
TTDATAPIHRPAPKLTELETKPTVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGE
RTREGNDLYEEFKESGVINSDDLSKSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSE
VSALLGRMPSAVGYQPTLGTDVGALQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPA
VDPLDSTSTMLQPSVVGDEHYRTARSVQATLQRYKELQDIIAILGLDELSEDDRRTVDRARKIEKFLSQPFFVAEIFTGM
SGKYVKLEETIAGFNMILAGELDHLPEQAFYLVGNIDEVKAKAEKIASEAKG

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=501, Percent_Identity=64.8702594810379, Blast_Score=646, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=306, Percent_Identity=29.4117647058824, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI19913428, Length=449, Percent_Identity=26.7260579064588, Blast_Score=106, Evalue=6e-23,
Organism=Homo sapiens, GI19913426, Length=380, Percent_Identity=25.7894736842105, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI50345984, Length=412, Percent_Identity=24.7572815533981, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI4757810, Length=412, Percent_Identity=24.7572815533981, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1790170, Length=470, Percent_Identity=63.8297872340426, Blast_Score=594, Evalue=1e-171,
Organism=Escherichia coli, GI1788251, Length=349, Percent_Identity=30.945558739255, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1790172, Length=457, Percent_Identity=23.8512035010941, Blast_Score=101, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI25144756, Length=485, Percent_Identity=65.360824742268, Blast_Score=629, Evalue=1e-180,
Organism=Caenorhabditis elegans, GI17570191, Length=433, Percent_Identity=26.0969976905312, Blast_Score=115, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=361, Percent_Identity=26.8698060941828, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17565854, Length=321, Percent_Identity=28.3489096573209, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=382, Percent_Identity=23.5602094240838, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71988063, Length=382, Percent_Identity=23.5602094240838, Blast_Score=81, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=519, Percent_Identity=62.4277456647399, Blast_Score=631, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=443, Percent_Identity=25.7336343115124, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6319370, Length=393, Percent_Identity=24.9363867684478, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=25.9842519685039, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24638766, Length=475, Percent_Identity=66.7368421052632, Blast_Score=639, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=481, Percent_Identity=65.4885654885655, Blast_Score=614, Evalue=1e-176,
Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=29.0123456790123, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI281361666, Length=443, Percent_Identity=26.1851015801354, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24646341, Length=443, Percent_Identity=26.1851015801354, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI17136796, Length=443, Percent_Identity=26.1851015801354, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI20129479, Length=399, Percent_Identity=26.0651629072682, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583988, Length=324, Percent_Identity=28.7037037037037, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583986, Length=324, Percent_Identity=28.7037037037037, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583984, Length=324, Percent_Identity=28.7037037037037, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=49.4845360824742, Blast_Score=87, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24658560, Length=382, Percent_Identity=23.5602094240838, Blast_Score=76, Evalue=6e-14,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 57181; Mature: 57181

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCRLVDTCAGHRTLRRSRHAVVMLRRSVRACVRHATPAKLYFLMAAAATATAGTKGVVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH
QVIGPVLDVEFPAGKLPKILNALRIDGKNPSGQHIAITAEVQQLLGDHRVRAVAMSSTDG
HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHCCHHEEEEEECCCCH
LVRGMEALDTGSAISVPVGEATLGRIFNVLGEPVDEQGPVTTDATAPIHRPAPKLTELET
HHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KPTVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGE
CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCC
RTREGNDLYEEFKESGVINSDDLSKSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVN
CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHCCC
KQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGALQERITSTLEGSITSI
CCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
QAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEH
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHH
YRTARSVQATLQRYKELQDIIAILGLDELSEDDRRTVDRARKIEKFLSQPFFVAEIFTGM
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
SGKYVKLEETIAGFNMILAGELDHLPEQAFYLVGNIDEVKAKAEKIASEAKG
CCCEEEHHHHHCCCCEEEECCHHHCCHHHEEEECCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCRLVDTCAGHRTLRRSRHAVVMLRRSVRACVRHATPAKLYFLMAAAATATAGTKGVVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH
QVIGPVLDVEFPAGKLPKILNALRIDGKNPSGQHIAITAEVQQLLGDHRVRAVAMSSTDG
HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHCCHHEEEEEECCCCH
LVRGMEALDTGSAISVPVGEATLGRIFNVLGEPVDEQGPVTTDATAPIHRPAPKLTELET
HHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KPTVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGE
CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCC
RTREGNDLYEEFKESGVINSDDLSKSKVALCFGQMNEPPGARMRVGLSALTMAEHFRDVN
CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHCCC
KQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGALQERITSTLEGSITSI
CCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
QAVYVPADDLTDPAPATTFAHLDATTVLARALAAKGIYPAVDPLDSTSTMLQPSVVGDEH
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHH
YRTARSVQATLQRYKELQDIIAILGLDELSEDDRRTVDRARKIEKFLSQPFFVAEIFTGM
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
SGKYVKLEETIAGFNMILAGELDHLPEQAFYLVGNIDEVKAKAEKIASEAKG
CCCEEEHHHHHCCCCEEEECCHHHCCHHHEEEECCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA