| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is mesJ [H]
Identifier: 124021791
GI number: 124021791
Start: 75210
End: 76241
Strand: Reverse
Name: mesJ [H]
Synonym: P9303_00761
Alternate gene names: 124021791
Gene position: 76241-75210 (Counterclockwise)
Preceding gene: 124021797
Following gene: 124021790
Centisome position: 2.84
GC content: 55.04
Gene sequence:
>1032_bases ATGGCCTCATCCAGCTCAGCGCAGCTGCCCTGGAGCGCCTGGCACGCGCGCCTCCATCACAAACTGCTAGCGAATCCAGA TCTACTGCCAGCAGAAGCCTCACTCTTGATCGCCGTGTCCGGTGGTCAAGATTCAATGGCCCTGCTCGGCCTCTTGATCG ATCTCCAACGAAAACATGGCTGGTCTTTAGAGGTGTGGCATGGCGACCACAACTGGCATCAACAATCAGCAACGATCGCA ACTGAACTCAAGGATTGGTGTGAAGCACACAACTTGAGCTTCTGGTCTGATCAAGCCAAACCTGGACAAACCAACAACGA AGCCACAGCGCGACATTGGCGATATGAACAACTGACGCTTCACACAGAACGTTTGTCATCCAACAACCCAAACCATCCAT GCAGGTATGTGCTCACAGGCCACACCAGTTCTGATCGAGCTGAAACCTTGCTACTCAACCTTGCCCGTGGTGCGGACCTG GCGGGACTGAGCAGCATGCGCCAATGCAGGCCCATCAGCAAAGACAATCCTCGCAAAAACGTGCAGCTCATACGCCCTTT GCTGGGGTTCTCGCGCGAGGACACCGCCCAGATTTGCAGCGAGCTGTCCTTACCTATCTGGCTTGATCCTGCCAATTCCA ATCCAGACTTCAGCCGCAACCGAGTCCGCCAAGAAGTGCTCCCAGTACTGGAATCTCTCCATCCGGGCTGCAGCCTGCGC ATAGCCGCTCTCGCCGAAAGGCTCAACCATCACCATGCGGACCAGCAAGCCATCGCCATGCTTGCTCTAAACAACCTCAG CAAGCAAAACGGCCTCTGCCGACAGGACCTAGCCCAACTACCGATCACAGCAAGAACAACTCTTTTGGCCTATTGGCTAA AGCGATCAGGAGCACCAAGCCTGCCAGCAGTCCAACTTGAACAGATCAGCCAAAGCATTGGCCCAGGAAAACCACCTGGA TCTCTACACCTCGCGCAGGGCTGGAAAGTCCAATGGCAGCGAAACTCGGTACAACTAGAACATCACGACTGA
Upstream 100 bases:
>100_bases TGAGCGAGGCGGGTCATTCAATCAACGATCTGTAGATCCATATTCCCATTAGCCAGGCTCCCGCACGGCAGACTGGCCTC AGCTGAGTGACCAGTGCGCT
Downstream 100 bases:
>100_bases CTCCGGTGGACGGCGACTTCCAACAGCAATACCTGGCCGCAGAGAAGGCCTATGGGGCAGGAAATTACGAAGCAGCGCAA TCAATCTGTGAACGCCTGCT
Product: ATPase
Products: NA
Alternate protein names: tRNA(Ile)-2-lysyl-cytidine synthase; tRNA(Ile)-lysidine synthetase [H]
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MASSSSAQLPWSAWHARLHHKLLANPDLLPAEASLLIAVSGGQDSMALLGLLIDLQRKHGWSLEVWHGDHNWHQQSATIA TELKDWCEAHNLSFWSDQAKPGQTNNEATARHWRYEQLTLHTERLSSNNPNHPCRYVLTGHTSSDRAETLLLNLARGADL AGLSSMRQCRPISKDNPRKNVQLIRPLLGFSREDTAQICSELSLPIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLR IAALAERLNHHHADQQAIAMLALNNLSKQNGLCRQDLAQLPITARTTLLAYWLKRSGAPSLPAVQLEQISQSIGPGKPPG SLHLAQGWKVQWQRNSVQLEHHD
Sequences:
>Translated_343_residues MASSSSAQLPWSAWHARLHHKLLANPDLLPAEASLLIAVSGGQDSMALLGLLIDLQRKHGWSLEVWHGDHNWHQQSATIA TELKDWCEAHNLSFWSDQAKPGQTNNEATARHWRYEQLTLHTERLSSNNPNHPCRYVLTGHTSSDRAETLLLNLARGADL AGLSSMRQCRPISKDNPRKNVQLIRPLLGFSREDTAQICSELSLPIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLR IAALAERLNHHHADQQAIAMLALNNLSKQNGLCRQDLAQLPITARTTLLAYWLKRSGAPSLPAVQLEQISQSIGPGKPPG SLHLAQGWKVQWQRNSVQLEHHD >Mature_342_residues ASSSSAQLPWSAWHARLHHKLLANPDLLPAEASLLIAVSGGQDSMALLGLLIDLQRKHGWSLEVWHGDHNWHQQSATIAT ELKDWCEAHNLSFWSDQAKPGQTNNEATARHWRYEQLTLHTERLSSNNPNHPCRYVLTGHTSSDRAETLLLNLARGADLA GLSSMRQCRPISKDNPRKNVQLIRPLLGFSREDTAQICSELSLPIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLRI AALAERLNHHHADQQAIAMLALNNLSKQNGLCRQDLAQLPITARTTLLAYWLKRSGAPSLPAVQLEQISQSIGPGKPPGS LHLAQGWKVQWQRNSVQLEHHD
Specific function: Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionin
COG id: COG0037
COG function: function code D; Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tRNA(Ile)-lysidine synthase family [H]
Homologues:
Organism=Escherichia coli, GI1786386, Length=204, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012094 - InterPro: IPR012795 - InterPro: IPR015262 - InterPro: IPR014729 - InterPro: IPR011063 [H]
Pfam domain/function: PF01171 ATP_bind_3; PF09179 DUF1946 [H]
EC number: NA
Molecular weight: Translated: 38308; Mature: 38177
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSSSAQLPWSAWHARLHHKLLANPDLLPAEASLLIAVSGGQDSMALLGLLIDLQRKHG CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC WSLEVWHGDHNWHQQSATIATELKDWCEAHNLSFWSDQAKPGQTNNEATARHWRYEQLTL CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHEE HTERLSSNNPNHPCRYVLTGHTSSDRAETLLLNLARGADLAGLSSMRQCRPISKDNPRKN EHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHH VQLIRPLLGFSREDTAQICSELSLPIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLR HHHHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH IAALAERLNHHHADQQAIAMLALNNLSKQNGLCRQDLAQLPITARTTLLAYWLKRSGAPS HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCC LPAVQLEQISQSIGPGKPPGSLHLAQGWKVQWQRNSVQLEHHD CCHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCEEEECCC >Mature Secondary Structure ASSSSAQLPWSAWHARLHHKLLANPDLLPAEASLLIAVSGGQDSMALLGLLIDLQRKHG CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC WSLEVWHGDHNWHQQSATIATELKDWCEAHNLSFWSDQAKPGQTNNEATARHWRYEQLTL CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHEE HTERLSSNNPNHPCRYVLTGHTSSDRAETLLLNLARGADLAGLSSMRQCRPISKDNPRKN EHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHH VQLIRPLLGFSREDTAQICSELSLPIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLR HHHHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH IAALAERLNHHHADQQAIAMLALNNLSKQNGLCRQDLAQLPITARTTLLAYWLKRSGAPS HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCC LPAVQLEQISQSIGPGKPPGSLHLAQGWKVQWQRNSVQLEHHD CCHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12917642 [H]