| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
Click here to switch to the map view.
The map label for this gene is 124026599
Identifier: 124026599
GI number: 124026599
Start: 1556616
End: 1556891
Strand: Direct
Name: 124026599
Synonym: NATL1_18941
Alternate gene names: NA
Gene position: 1556616-1556891 (Clockwise)
Preceding gene: 124026598
Following gene: 124026600
Centisome position: 83.48
GC content: 38.77
Gene sequence:
>276_bases GTGAGTCAACCCCCCATTCTGCGTAGGTGTGTAGCTTGCAAAAAAGTTCTTGATCGCAAGTATTTTTTAAAAGTTACTAG AGATTTTCAGAATGGAGTAGTTTTCTCAGGCGGGATGGGAAGATCAGCCTATCTCTGTCCAACTGAGTCATGTTTTCAAG AAGCTTTGAAGCGTAAAAGATTACAAAAGTCTTTGAGATGTGATATTCACTCAAGCGTTTTCAATATGCTCCAAAAACAA CTTAATACCTGCATTGATTCAGATACTGAGGCATGA
Upstream 100 bases:
>100_bases ATACTGATGACACTGAAACTGAAGAAAGTGATATTGATGAAACAATCGAAGACACAGTTACTGCTAAAGATAAAATAATT ACAGAAGAGGAAGGAACCCG
Downstream 100 bases:
>100_bases TGTTCATTAAGAGAACTCAGTAAACTCAAAAACCAAATCTAAAGCTCAAGCACAACATTAATGACCAGCAGCGGCAAAAT CAGAATTTATGAATTGTCCA
Product: nucleic-acid-binding protein implicated in transcription termination
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 91; Mature: 90
Protein sequence:
>91_residues MSQPPILRRCVACKKVLDRKYFLKVTRDFQNGVVFSGGMGRSAYLCPTESCFQEALKRKRLQKSLRCDIHSSVFNMLQKQ LNTCIDSDTEA
Sequences:
>Translated_91_residues MSQPPILRRCVACKKVLDRKYFLKVTRDFQNGVVFSGGMGRSAYLCPTESCFQEALKRKRLQKSLRCDIHSSVFNMLQKQ LNTCIDSDTEA >Mature_90_residues SQPPILRRCVACKKVLDRKYFLKVTRDFQNGVVFSGGMGRSAYLCPTESCFQEALKRKRLQKSLRCDIHSSVFNMLQKQL NTCIDSDTEA
Specific function: Unknown
COG id: COG2740
COG function: function code K; Predicted nucleic-acid-binding protein implicated in transcription termination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10436; Mature: 10305
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 9.9 %Cys+Met (Translated Protein) 6.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 8.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPPILRRCVACKKVLDRKYFLKVTRDFQNGVVFSGGMGRSAYLCPTESCFQEALKRKR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEECCCCHHHHHHHHHHHH LQKSLRCDIHSSVFNMLQKQLNTCIDSDTEA HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SQPPILRRCVACKKVLDRKYFLKVTRDFQNGVVFSGGMGRSAYLCPTESCFQEALKRKR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEECCCCHHHHHHHHHHHH LQKSLRCDIHSSVFNMLQKQLNTCIDSDTEA HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA