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The map label for this gene is glcD [H]

Identifier: 124026428

GI number: 124026428

Start: 1408621

End: 1409973

Strand: Reverse

Name: glcD [H]

Synonym: NATL1_17231

Alternate gene names: 124026428

Gene position: 1409973-1408621 (Counterclockwise)

Preceding gene: 124026429

Following gene: 124026424

Centisome position: 75.61

GC content: 39.76

Gene sequence:

>1353_bases
ATGACTAATACAAAGAAAGTAGAGTTGCTTTTAAGTGAACTAAAATCAGTACCTGATCTAGAGATCTATCAAAAAACTAG
TGATTTAAAAAGGTTCTCTAAAGACTTCTTTGATTATTCGCCAATATTAATTGATGAACTAAAAGATTGTTTGGCTGACA
TAGTCGTTCGACCGCTTTCGGTAGATGCGATTATTGTTGTGGCTCAAATTTGTAATAAGTATTCAACTCCTTTGACCCTT
AGAGGCTCTGGAACAGGAAATTATGGTCAGTGTGTCCCACTTAACGGTGGAATCGTCATGCTTATGTCTGGTCTTCGGGA
AATTAGAAATTTCGATTCAAAATCAGGTGAAATTACAGTTGAATCTGGTTGTTTACTTAGAGATATTAATGATGAGTTGA
TCAAGCATGGTCGTCAGTTACGGTTGCTTCCGAGTACATGGAGAAGCGCTTCTATTGGTGGCTTTATTGCTGGCGGTTCA
GGCGGAATAGGATCTGTTCGTTGGGGCTTCCTTAGAGATCCTGGGCATTTGCAGGCCTTAGAAGTAATAACGACTGAGGA
TTCGCCAAGAAAACTTGAATTGAATGCAAACAATTCCGAAGCTTTAAATCATGCTTATGGAACCAACGGAATTATTACTG
CATTGACATTAACAACTGCTCCATATGTTGAATGGCAACAAATAGTAGTCGATTGTTTTGATTTGGATCAGGCGGTTGAC
TTGTTAAGCAAATTCAGTTGTGCAGCGCTGGAGCTTTATTTGGGAACTTTGTTAGAGAAAGAAATTGTCACTTGCCTTCC
CTCTGGGTTTGGCAAACCTTCAAGTAAGCATAGGATTTTACTTTTGGTTTCACCTGATGGTGTTAGTACCATTGAGCGAC
TTGCAAAATCGGCTGGCGCTGACTTTGATGACTTAGGTCCTGAAAATCTTAAGGCAGGTACAGGCCTTCGAGAGCTTTCT
TGGAATCACACGACTTTACATATGCGTGGCATTGATCCTAATTGGACATATTTGCAAATGCTTCTTCCTCAGCCTGAGTT
AGAAATAATGAAAAAATTGAAATCCGAGTGGGGATCAAATCTTTTATGGCATTTGGAATGTGTGCGTCAAAATGGAGTTC
AAAGATTAGCGTCACTTCCTCTTGTTAAGTGGCAAGGTGAAGCAGCTATGAATCAATTAATCAGCCAATGCAGAGACCTT
GGTGCAGTGATTTTTAATCCGCATACAATCACTGTTGAAGATGGAGGTCTAGGTGTGATTGATTCTGATCAAGTGCAAGC
CAAGAGTAACTTTGATCCAAAAGGGATTCTCAATCCAGGTAAACTCAAAGGGTGGAATCTAAAAGTCAATTGA

Upstream 100 bases:

>100_bases
AAGCTTTGTCTGAAAGACCTAAAAGAAGAGTAGTAGTTAATGGCGAATTTTTAAATGAATTGCCTAAAAACAAAAAATCA
ACATTCAACAATTCTCACTC

Downstream 100 bases:

>100_bases
TTTAATTGCTATATTTTTAAACAATTTAACTTGTCAAGATTTTCCTTTGAAAAAGGTCACCTATTAAATATAGCGATCCT
GAAATGATTGGTGGTGGAGA

Product: FAD/FMN-containing dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MTNTKKVELLLSELKSVPDLEIYQKTSDLKRFSKDFFDYSPILIDELKDCLADIVVRPLSVDAIIVVAQICNKYSTPLTL
RGSGTGNYGQCVPLNGGIVMLMSGLREIRNFDSKSGEITVESGCLLRDINDELIKHGRQLRLLPSTWRSASIGGFIAGGS
GGIGSVRWGFLRDPGHLQALEVITTEDSPRKLELNANNSEALNHAYGTNGIITALTLTTAPYVEWQQIVVDCFDLDQAVD
LLSKFSCAALELYLGTLLEKEIVTCLPSGFGKPSSKHRILLLVSPDGVSTIERLAKSAGADFDDLGPENLKAGTGLRELS
WNHTTLHMRGIDPNWTYLQMLLPQPELEIMKKLKSEWGSNLLWHLECVRQNGVQRLASLPLVKWQGEAAMNQLISQCRDL
GAVIFNPHTITVEDGGLGVIDSDQVQAKSNFDPKGILNPGKLKGWNLKVN

Sequences:

>Translated_450_residues
MTNTKKVELLLSELKSVPDLEIYQKTSDLKRFSKDFFDYSPILIDELKDCLADIVVRPLSVDAIIVVAQICNKYSTPLTL
RGSGTGNYGQCVPLNGGIVMLMSGLREIRNFDSKSGEITVESGCLLRDINDELIKHGRQLRLLPSTWRSASIGGFIAGGS
GGIGSVRWGFLRDPGHLQALEVITTEDSPRKLELNANNSEALNHAYGTNGIITALTLTTAPYVEWQQIVVDCFDLDQAVD
LLSKFSCAALELYLGTLLEKEIVTCLPSGFGKPSSKHRILLLVSPDGVSTIERLAKSAGADFDDLGPENLKAGTGLRELS
WNHTTLHMRGIDPNWTYLQMLLPQPELEIMKKLKSEWGSNLLWHLECVRQNGVQRLASLPLVKWQGEAAMNQLISQCRDL
GAVIFNPHTITVEDGGLGVIDSDQVQAKSNFDPKGILNPGKLKGWNLKVN
>Mature_449_residues
TNTKKVELLLSELKSVPDLEIYQKTSDLKRFSKDFFDYSPILIDELKDCLADIVVRPLSVDAIIVVAQICNKYSTPLTLR
GSGTGNYGQCVPLNGGIVMLMSGLREIRNFDSKSGEITVESGCLLRDINDELIKHGRQLRLLPSTWRSASIGGFIAGGSG
GIGSVRWGFLRDPGHLQALEVITTEDSPRKLELNANNSEALNHAYGTNGIITALTLTTAPYVEWQQIVVDCFDLDQAVDL
LSKFSCAALELYLGTLLEKEIVTCLPSGFGKPSSKHRILLLVSPDGVSTIERLAKSAGADFDDLGPENLKAGTGLRELSW
NHTTLHMRGIDPNWTYLQMLLPQPELEIMKKLKSEWGSNLLWHLECVRQNGVQRLASLPLVKWQGEAAMNQLISQCRDLG
AVIFNPHTITVEDGGLGVIDSDQVQAKSNFDPKGILNPGKLKGWNLKVN

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789351, Length=243, Percent_Identity=22.2222222222222, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17534361, Length=267, Percent_Identity=25.4681647940075, Blast_Score=72, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6320023, Length=177, Percent_Identity=27.1186440677966, Blast_Score=73, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6320764, Length=176, Percent_Identity=24.4318181818182, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 49480; Mature: 49349

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNTKKVELLLSELKSVPDLEIYQKTSDLKRFSKDFFDYSPILIDELKDCLADIVVRPLS
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
VDAIIVVAQICNKYSTPLTLRGSGTGNYGQCVPLNGGIVMLMSGLREIRNFDSKSGEITV
HHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEE
ESGCLLRDINDELIKHGRQLRLLPSTWRSASIGGFIAGGSGGIGSVRWGFLRDPGHLQAL
ECCEEEECCCHHHHHCCCEEEECCCCCCCCCCCCEEECCCCCCCCCEECEECCCCCEEEE
EVITTEDSPRKLELNANNSEALNHAYGTNGIITALTLTTAPYVEWQQIVVDCFDLDQAVD
EEEECCCCCCEEEECCCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
LLSKFSCAALELYLGTLLEKEIVTCLPSGFGKPSSKHRILLLVSPDGVSTIERLAKSAGA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC
DFDDLGPENLKAGTGLRELSWNHTTLHMRGIDPNWTYLQMLLPQPELEIMKKLKSEWGSN
CCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCC
LLWHLECVRQNGVQRLASLPLVKWQGEAAMNQLISQCRDLGAVIFNPHTITVEDGGLGVI
CEEHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCEEEECCEEEEEECCCCCCC
DSDQVQAKSNFDPKGILNPGKLKGWNLKVN
CCCCHHHCCCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
TNTKKVELLLSELKSVPDLEIYQKTSDLKRFSKDFFDYSPILIDELKDCLADIVVRPLS
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
VDAIIVVAQICNKYSTPLTLRGSGTGNYGQCVPLNGGIVMLMSGLREIRNFDSKSGEITV
HHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEE
ESGCLLRDINDELIKHGRQLRLLPSTWRSASIGGFIAGGSGGIGSVRWGFLRDPGHLQAL
ECCEEEECCCHHHHHCCCEEEECCCCCCCCCCCCEEECCCCCCCCCEECEECCCCCEEEE
EVITTEDSPRKLELNANNSEALNHAYGTNGIITALTLTTAPYVEWQQIVVDCFDLDQAVD
EEEECCCCCCEEEECCCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
LLSKFSCAALELYLGTLLEKEIVTCLPSGFGKPSSKHRILLLVSPDGVSTIERLAKSAGA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC
DFDDLGPENLKAGTGLRELSWNHTTLHMRGIDPNWTYLQMLLPQPELEIMKKLKSEWGSN
CCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCC
LLWHLECVRQNGVQRLASLPLVKWQGEAAMNQLISQCRDLGAVIFNPHTITVEDGGLGVI
CEEHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCEEEECCEEEEEECCCCCCC
DSDQVQAKSNFDPKGILNPGKLKGWNLKVN
CCCCHHHCCCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]