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The map label for this gene is pcbD [H]

Identifier: 124026261

GI number: 124026261

Start: 1263263

End: 1264375

Strand: Reverse

Name: pcbD [H]

Synonym: NATL1_15551

Alternate gene names: 124026261

Gene position: 1264375-1263263 (Counterclockwise)

Preceding gene: 124026262

Following gene: 124026260

Centisome position: 67.8

GC content: 44.2

Gene sequence:

>1113_bases
ATGCAGAGCTATGGAAATCCAGACGTTACTTACGAGTGGTGGGCTGGTAATTCTGTGGTCACAAGTCGTTCTGGTCGATT
CATAGCCTCCCATATTGGGCATACAGGCTTGATCGCATTCGCGGCTGGAGGAAGTACCCTTTGGGAACTTGCTCGCTACA
ATCCAGAGATCCCTATGGGGCATCAAAGCTCCTTATTCTTGGGGCATCTTGCCGCTTTTGGCGTAGGTTTTGACGAGGCT
GGAGCTTGGACTGGTGTTGGTGTAGCAGCCGTAGCCATTGTCCACTTGGTTTTGTCAATGGTTTACGGAGGTGGTGCTTT
ATTGCATGCAGTTTATTTTGAAGCTGATGTTGCAGATAGTGAGGTTCCAAGAGCTAGAAAGTTTAAATTGGAATGGAATA
ATCCGGATAATCAGACGTTTATCCTGGGCCATCATTTATTCTTCTTTGGAATGGCTTGCATAGCCTTTGTTGAATGGGCA
AGAATTCACGGCATATATGATCCAGCTATTGGTGCGGTAAGACAGGTCAATTACAATCTTGATTTGACGATGATATGGAA
TCGTCAATTTGATTTCATCGGAATTGATAGTCTCGAAGATGTAATGGGTGGTCATGCATTTCTTGCTTTTGCAGAATTGA
CCGGCGCAACTATTCATATGGTTGCAGGTTCAACTCAATGGGAAAACAAGAGACTTGGTGAATGGAGTAAGTACAAAGGA
GCTGAATTGCTTTCTGCAGAGGCAGTCCTTTCATGGTCTCTTGCTGGTATTGGTTGGATGGCAATTGTTGCTGCATTCTG
GGCTGCTACCAATACAACCGTTTATCCAATTGAGTGGTTTGGTGAGCCTTTGAAGTTACAGTTCTCAGTTGCTCCATATT
GGATTGATACAGCAGATAGCACTGGCATAACAGCTTTCTTTGGTCACACAACTAGGGCTGCTTTAGTTAATGTTCATTAT
TACTTTGGATTTTTCTTCTTACAGGGTCATTTCTGGCATGCTTTACGTGCGTTAGGATTTGACTTCAAGAAGGTTTCCGA
AGCAATTGGTAATACTGAAGGGGCAACAGTCAGGGTTGAAGGCGCTGGTTTCAATGGAAGAGCTCCAAGATAG

Upstream 100 bases:

>100_bases
GAAAAAAGAATTTCAAACATAACGACCTTTAACTATTCTGCACATATCAATTGAACAGAGTGTAATCTGCACGCATATTT
CCCTGATTCGCTTAGACATT

Downstream 100 bases:

>100_bases
ATTAAAAAAAAAACAAAAATATCCCTCTATTATGGGGGGTATTTTTTTGTCTATTTTTAAATAAATAGAGCTTTTTTGGT
AAAAAATGGGAGAGACCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MQSYGNPDVTYEWWAGNSVVTSRSGRFIASHIGHTGLIAFAAGGSTLWELARYNPEIPMGHQSSLFLGHLAAFGVGFDEA
GAWTGVGVAAVAIVHLVLSMVYGGGALLHAVYFEADVADSEVPRARKFKLEWNNPDNQTFILGHHLFFFGMACIAFVEWA
RIHGIYDPAIGAVRQVNYNLDLTMIWNRQFDFIGIDSLEDVMGGHAFLAFAELTGATIHMVAGSTQWENKRLGEWSKYKG
AELLSAEAVLSWSLAGIGWMAIVAAFWAATNTTVYPIEWFGEPLKLQFSVAPYWIDTADSTGITAFFGHTTRAALVNVHY
YFGFFFLQGHFWHALRALGFDFKKVSEAIGNTEGATVRVEGAGFNGRAPR

Sequences:

>Translated_370_residues
MQSYGNPDVTYEWWAGNSVVTSRSGRFIASHIGHTGLIAFAAGGSTLWELARYNPEIPMGHQSSLFLGHLAAFGVGFDEA
GAWTGVGVAAVAIVHLVLSMVYGGGALLHAVYFEADVADSEVPRARKFKLEWNNPDNQTFILGHHLFFFGMACIAFVEWA
RIHGIYDPAIGAVRQVNYNLDLTMIWNRQFDFIGIDSLEDVMGGHAFLAFAELTGATIHMVAGSTQWENKRLGEWSKYKG
AELLSAEAVLSWSLAGIGWMAIVAAFWAATNTTVYPIEWFGEPLKLQFSVAPYWIDTADSTGITAFFGHTTRAALVNVHY
YFGFFFLQGHFWHALRALGFDFKKVSEAIGNTEGATVRVEGAGFNGRAPR
>Mature_370_residues
MQSYGNPDVTYEWWAGNSVVTSRSGRFIASHIGHTGLIAFAAGGSTLWELARYNPEIPMGHQSSLFLGHLAAFGVGFDEA
GAWTGVGVAAVAIVHLVLSMVYGGGALLHAVYFEADVADSEVPRARKFKLEWNNPDNQTFILGHHLFFFGMACIAFVEWA
RIHGIYDPAIGAVRQVNYNLDLTMIWNRQFDFIGIDSLEDVMGGHAFLAFAELTGATIHMVAGSTQWENKRLGEWSKYKG
AELLSAEAVLSWSLAGIGWMAIVAAFWAATNTTVYPIEWFGEPLKLQFSVAPYWIDTADSTGITAFFGHTTRAALVNVHY
YFGFFFLQGHFWHALRALGFDFKKVSEAIGNTEGATVRVEGAGFNGRAPR

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 40651; Mature: 40651

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSYGNPDVTYEWWAGNSVVTSRSGRFIASHIGHTGLIAFAAGGSTLWELARYNPEIPMG
CCCCCCCCCEEEEECCCEEEECCCCCCHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCC
HQSSLFLGHLAAFGVGFDEAGAWTGVGVAAVAIVHLVLSMVYGGGALLHAVYFEADVADS
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCCC
EVPRARKFKLEWNNPDNQTFILGHHLFFFGMACIAFVEWARIHGIYDPAIGAVRQVNYNL
CCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEECCCE
DLTMIWNRQFDFIGIDSLEDVMGGHAFLAFAELTGATIHMVAGSTQWENKRLGEWSKYKG
EEEEEECCCCCEEECCCHHHHHCCHHEEEEEHHCCCEEEEEECCCCCCCCCCCCCHHCCC
AELLSAEAVLSWSLAGIGWMAIVAAFWAATNTTVYPIEWFGEPLKLQFSVAPYWIDTADS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCEEEEEEECCEEEECCCC
TGITAFFGHTTRAALVNVHYYFGFFFLQGHFWHALRALGFDFKKVSEAIGNTEGATVRVE
CCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEE
GAGFNGRAPR
CCCCCCCCCC
>Mature Secondary Structure
MQSYGNPDVTYEWWAGNSVVTSRSGRFIASHIGHTGLIAFAAGGSTLWELARYNPEIPMG
CCCCCCCCCEEEEECCCEEEECCCCCCHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCC
HQSSLFLGHLAAFGVGFDEAGAWTGVGVAAVAIVHLVLSMVYGGGALLHAVYFEADVADS
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCCC
EVPRARKFKLEWNNPDNQTFILGHHLFFFGMACIAFVEWARIHGIYDPAIGAVRQVNYNL
CCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEECCCE
DLTMIWNRQFDFIGIDSLEDVMGGHAFLAFAELTGATIHMVAGSTQWENKRLGEWSKYKG
EEEEEECCCCCEEECCCHHHHHCCHHEEEEEHHCCCEEEEEECCCCCCCCCCCCCHHCCC
AELLSAEAVLSWSLAGIGWMAIVAAFWAATNTTVYPIEWFGEPLKLQFSVAPYWIDTADS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCEEEEEEECCEEEECCCC
TGITAFFGHTTRAALVNVHYYFGFFFLQGHFWHALRALGFDFKKVSEAIGNTEGATVRVE
CCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEE
GAGFNGRAPR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA