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The map label for this gene is pcbE

Identifier: 124026262

GI number: 124026262

Start: 1264613

End: 1265662

Strand: Reverse

Name: pcbE

Synonym: NATL1_15561

Alternate gene names: 124026262

Gene position: 1265662-1264613 (Counterclockwise)

Preceding gene: 124026264

Following gene: 124026261

Centisome position: 67.87

GC content: 43.9

Gene sequence:

>1050_bases
ATGCAGACCTACGGAAACCCGGATGTCACCTATGGTTGGTGGGCTGGAAATGCTGGGGTTACAAACAAATCAGGTAAATT
CATTGCTGCACACATTGCTCATACTGGCTTGATAGCCTTTGCAGCAGGTGGAAGTACCCTTTGGGAACTAGCGAGATACA
ACCCTGAGATTCCAATGGGACATCAGAGTTCGATCTTTCTTGCTCATTTAGCTTCAATTGGTATCGGCTTTGATGAGGCT
GGTGCTTGGACAGGGGCAGGAGTTGCCTCTATTGCAATCGTACATTTGGTTCTTTCCATGGTCTATGGAGCCGGAGGCTT
ATTGCACTCGGTGCTATTCGTTGGCGATATGCAAGATTCAGAGGTCCCTCAAGCAAGAAAGTTCAAACTTGAGTGGGACA
ACCCAGATAATCAGACTTTTATACTTGGTCACCATTTACTTTTCTTTGGTGTTGCATGTATTTGGTTCGTTGAATGGGCA
AGAATCCACGGGATTTATGACCCTGCTATAGGAGCTGTTCGACAAGTTGAGTACAACCTTAACTTGACCAGTATTTGGAA
CCATCAGTTTGATTTCTTGGCTATTGATAGTCTTGAAGATGTTTTGGGAGGCCATGCTTTCTTGGCTTTCTTGGAAATAA
CAGGTGGAGCTTTCCATATCGCTACTAAGCAAGTTGGTGAATATACCAAGTTCAAAGGAGCTGGTCTTCTTTCTGCAGAA
GCAATTCTTTCTTTCTCTTGTGCAGGTCTTGGTTGGATGGCTGTTGTTGCTGCTTTCTGGTGTGCACAGAACACAACCGT
TTACCCAGAAGCTTGGTATGGCGAAGCATTGATCTTGAAGTTTGGTATTGCTCCTTATTGGATAGACAGTGTTGATCTTT
CAGGAGGTCCAGCTTTCTTTGGTCATACGACTAGGGCGGCTCTAGCAAATGTTCATTATTACTTTGGATTTTTCTTCCTT
CAAGGACATCTATGGCATGCTTTAAGAGCTATGGGATTTGATTTTAAGAGGATTCTTAAGGAGCCTCTTCCTGCTCAGCT
TTACGAATAA

Upstream 100 bases:

>100_bases
AAACTTTACTACTTCTTTATACGCCTTATGACTATTGGTAGTTTTTGAATTCAGGTGCCTGTAAGGTGTGCTCACCGTAT
TACGCCAAAAAACTTAAATC

Downstream 100 bases:

>100_bases
ACAATTAAAAACTTGTTTTTAAAAGAGAGGATTTAATCCTCTCTTTTTTTTGTTTTTTTTTCACTTGGTGGAATAAATTC
TTTCGAAGCATTGATTTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MQTYGNPDVTYGWWAGNAGVTNKSGKFIAAHIAHTGLIAFAAGGSTLWELARYNPEIPMGHQSSIFLAHLASIGIGFDEA
GAWTGAGVASIAIVHLVLSMVYGAGGLLHSVLFVGDMQDSEVPQARKFKLEWDNPDNQTFILGHHLLFFGVACIWFVEWA
RIHGIYDPAIGAVRQVEYNLNLTSIWNHQFDFLAIDSLEDVLGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSAE
AILSFSCAGLGWMAVVAAFWCAQNTTVYPEAWYGEALILKFGIAPYWIDSVDLSGGPAFFGHTTRAALANVHYYFGFFFL
QGHLWHALRAMGFDFKRILKEPLPAQLYE

Sequences:

>Translated_349_residues
MQTYGNPDVTYGWWAGNAGVTNKSGKFIAAHIAHTGLIAFAAGGSTLWELARYNPEIPMGHQSSIFLAHLASIGIGFDEA
GAWTGAGVASIAIVHLVLSMVYGAGGLLHSVLFVGDMQDSEVPQARKFKLEWDNPDNQTFILGHHLLFFGVACIWFVEWA
RIHGIYDPAIGAVRQVEYNLNLTSIWNHQFDFLAIDSLEDVLGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSAE
AILSFSCAGLGWMAVVAAFWCAQNTTVYPEAWYGEALILKFGIAPYWIDSVDLSGGPAFFGHTTRAALANVHYYFGFFFL
QGHLWHALRAMGFDFKRILKEPLPAQLYE
>Mature_349_residues
MQTYGNPDVTYGWWAGNAGVTNKSGKFIAAHIAHTGLIAFAAGGSTLWELARYNPEIPMGHQSSIFLAHLASIGIGFDEA
GAWTGAGVASIAIVHLVLSMVYGAGGLLHSVLFVGDMQDSEVPQARKFKLEWDNPDNQTFILGHHLLFFGVACIWFVEWA
RIHGIYDPAIGAVRQVEYNLNLTSIWNHQFDFLAIDSLEDVLGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSAE
AILSFSCAGLGWMAVVAAFWCAQNTTVYPEAWYGEALILKFGIAPYWIDSVDLSGGPAFFGHTTRAALANVHYYFGFFFL
QGHLWHALRAMGFDFKRILKEPLPAQLYE

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PCBE_PROMT (Q46JW8)

Other databases:

- EMBL:   CP000095
- RefSeq:   YP_291913.1
- ProteinModelPortal:   Q46JW8
- SMR:   Q46JW8
- STRING:   Q46JW8
- GeneID:   3606097
- GenomeReviews:   CP000095_GR
- KEGG:   pmn:PMN2A_0719
- eggNOG:   NOG10575
- HOGENOM:   HBG284351
- OMA:   ANIAILH
- ProtClustDB:   CLSK919577
- BioCyc:   PMAR59920:PMN2A_0719-MONOMER
- InterPro:   IPR000932

Pfam domain/function: PF00421 PSII

EC number: NA

Molecular weight: Translated: 38245; Mature: 38245

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x21896dfc)-; HASH(0x21415790)-; HASH(0x216e8d7c)-; HASH(0x204cbddc)-; HASH(0x21a9b504)-; HASH(0x2128ed3c)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYGNPDVTYGWWAGNAGVTNKSGKFIAAHIAHTGLIAFAAGGSTLWELARYNPEIPMG
CCCCCCCCCEEEEECCCCCCCCCCCCEEEEEHHHCCEEEEECCCHHHHHHHHCCCCCCCC
HQSSIFLAHLASIGIGFDEAGAWTGAGVASIAIVHLVLSMVYGAGGLLHSVLFVGDMQDS
CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
EVPQARKFKLEWDNPDNQTFILGHHLLFFGVACIWFVEWARIHGIYDPAIGAVRQVEYNL
CCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEECC
NLTSIWNHQFDFLAIDSLEDVLGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSAE
CEEEECCCCCCEEEECCHHHHHCHHHEEEEEEECCCEEEEEHHHHCCHHHCCCCCCCHHH
AILSFSCAGLGWMAVVAAFWCAQNTTVYPEAWYGEALILKFGIAPYWIDSVDLSGGPAFF
HHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCEEEECEECCCCCEEC
GHTTRAALANVHYYFGFFFLQGHLWHALRAMGFDFKRILKEPLPAQLYE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCH
>Mature Secondary Structure
MQTYGNPDVTYGWWAGNAGVTNKSGKFIAAHIAHTGLIAFAAGGSTLWELARYNPEIPMG
CCCCCCCCCEEEEECCCCCCCCCCCCEEEEEHHHCCEEEEECCCHHHHHHHHCCCCCCCC
HQSSIFLAHLASIGIGFDEAGAWTGAGVASIAIVHLVLSMVYGAGGLLHSVLFVGDMQDS
CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
EVPQARKFKLEWDNPDNQTFILGHHLLFFGVACIWFVEWARIHGIYDPAIGAVRQVEYNL
CCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEECC
NLTSIWNHQFDFLAIDSLEDVLGGHAFLAFLEITGGAFHIATKQVGEYTKFKGAGLLSAE
CEEEECCCCCCEEEECCHHHHHCHHHEEEEEEECCCEEEEEHHHHCCHHHCCCCCCCHHH
AILSFSCAGLGWMAVVAAFWCAQNTTVYPEAWYGEALILKFGIAPYWIDSVDLSGGPAFF
HHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCEEEECEECCCCCEEC
GHTTRAALANVHYYFGFFFLQGHLWHALRAMGFDFKRILKEPLPAQLYE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA