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The map label for this gene is yhdX [H]

Identifier: 124026133

GI number: 124026133

Start: 1153764

End: 1154663

Strand: Reverse

Name: yhdX [H]

Synonym: NATL1_14261

Alternate gene names: 124026133

Gene position: 1154663-1153764 (Counterclockwise)

Preceding gene: 124026134

Following gene: 124026132

Centisome position: 61.92

GC content: 31.78

Gene sequence:

>900_bases
ATGAAAAAAAATCAAAAATTATTTTTGCAATTTGGAATATCTATTATCTTTTTTGGTTTATTTGGGATACTGATTAATAA
TTTAACAATAAATCTAATAAGAACAGGTCTTGGTTTTAATTTTAGCTGGCTTTTTAAACCAGCAAGTTTTGCTTTAGCGG
AACACCCCTTACCTTATACCTCTTCAGATAGCTATGCTTGGGCTTTGTTTATAGGTTGGCTTAACAGTCTTAAAGTTATT
GTCTCATCATTAATATTGGCTACTTTCTTTGGGACACTAATAGGCTTTGCTAGGACAGGTACGAACTCATTACTAGGTCT
CATTTCGGCTGGTTACATCACAATAATTAGACAAACCCCTCTTTTACTTCAACTTATGTTTTGGTATTTTGTTGGGTTCT
TAGGTTTAAAAGACAATATGTTTATCCAAATAAAAAATATATTTAACATTTCAAATAAAGGAATAGAGTTTTCAGGATTA
ACTTTTTCTTCGGAGTTTCTAGCATTATTATTTGGTCTAAGTATCTTTACAAGTGCTTACATAGCAGAGGTAATCCGCGG
AGGTATTCTTTCTGTTTCGAGAGGGCAATGGGAAGCATTTAGGAGCTTAGGAATTTCAGAAAGAAAAGGACTTATCCGCA
TAATACTTCCACAGGCATTACCAGCGATTATTCCTGGACTAACAAGTCAATACCTTAACCTTGCTAAAAATAGTACCTTA
GCTATAGCCGTTGGATATTCAGATATTTACGCAATTAATGATACTATCATTAATCAAACAGGTAGAGCTATCGAGTGTTT
TATTATATTACTTTTTAGCTTCTTGCTATTAAATTTATTAATAACTAATGCCATGGAAATCATAAATAGATTGATTTTAA
AATCACAAAGATACAGTTGA

Upstream 100 bases:

>100_bases
AAATAGCGAAGTACCTATTCCAAGAGGACAAAATGAGTTGTACAAGAAAGGAGGTGTACATATTTCACCACCATTTAACT
AAAAATAATTTATTGCGGGA

Downstream 100 bases:

>100_bases
CATATGTTCGGAATTTATACAAGTTCATTAATAATTTTCTTCAAGAATGCAAGAAAAACATTGTTTTCAAATTTATTCAA
TACAATTATTACTTTGCTCA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKKNQKLFLQFGISIIFFGLFGILINNLTINLIRTGLGFNFSWLFKPASFALAEHPLPYTSSDSYAWALFIGWLNSLKVI
VSSLILATFFGTLIGFARTGTNSLLGLISAGYITIIRQTPLLLQLMFWYFVGFLGLKDNMFIQIKNIFNISNKGIEFSGL
TFSSEFLALLFGLSIFTSAYIAEVIRGGILSVSRGQWEAFRSLGISERKGLIRIILPQALPAIIPGLTSQYLNLAKNSTL
AIAVGYSDIYAINDTIINQTGRAIECFIILLFSFLLLNLLITNAMEIINRLILKSQRYS

Sequences:

>Translated_299_residues
MKKNQKLFLQFGISIIFFGLFGILINNLTINLIRTGLGFNFSWLFKPASFALAEHPLPYTSSDSYAWALFIGWLNSLKVI
VSSLILATFFGTLIGFARTGTNSLLGLISAGYITIIRQTPLLLQLMFWYFVGFLGLKDNMFIQIKNIFNISNKGIEFSGL
TFSSEFLALLFGLSIFTSAYIAEVIRGGILSVSRGQWEAFRSLGISERKGLIRIILPQALPAIIPGLTSQYLNLAKNSTL
AIAVGYSDIYAINDTIINQTGRAIECFIILLFSFLLLNLLITNAMEIINRLILKSQRYS
>Mature_299_residues
MKKNQKLFLQFGISIIFFGLFGILINNLTINLIRTGLGFNFSWLFKPASFALAEHPLPYTSSDSYAWALFIGWLNSLKVI
VSSLILATFFGTLIGFARTGTNSLLGLISAGYITIIRQTPLLLQLMFWYFVGFLGLKDNMFIQIKNIFNISNKGIEFSGL
TFSSEFLALLFGLSIFTSAYIAEVIRGGILSVSRGQWEAFRSLGISERKGLIRIILPQALPAIIPGLTSQYLNLAKNSTL
AIAVGYSDIYAINDTIINQTGRAIECFIILLFSFLLLNLLITNAMEIINRLILKSQRYS

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=147, Percent_Identity=46.9387755102041, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1786874, Length=230, Percent_Identity=27.3913043478261, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786873, Length=213, Percent_Identity=26.2910798122066, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788226, Length=198, Percent_Identity=29.2929292929293, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787087, Length=195, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787030, Length=200, Percent_Identity=28, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082239, Length=82, Percent_Identity=42.6829268292683, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33332; Mature: 33332

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNQKLFLQFGISIIFFGLFGILINNLTINLIRTGLGFNFSWLFKPASFALAEHPLPYT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCC
SSDSYAWALFIGWLNSLKVIVSSLILATFFGTLIGFARTGTNSLLGLISAGYITIIRQTP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEECCCH
LLLQLMFWYFVGFLGLKDNMFIQIKNIFNISNKGIEFSGLTFSSEFLALLFGLSIFTSAY
HHHHHHHHHHHHHHCCCCCEEEEEEEHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
IAEVIRGGILSVSRGQWEAFRSLGISERKGLIRIILPQALPAIIPGLTSQYLNLAKNSTL
HHHHHCCCCEECCCCHHHHHHHCCCHHHCCEEEEECHHHHHHHHCCHHHHHHHHHCCCEE
AIAVGYSDIYAINDTIINQTGRAIECFIILLFSFLLLNLLITNAMEIINRLILKSQRYS
EEEECCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKNQKLFLQFGISIIFFGLFGILINNLTINLIRTGLGFNFSWLFKPASFALAEHPLPYT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCC
SSDSYAWALFIGWLNSLKVIVSSLILATFFGTLIGFARTGTNSLLGLISAGYITIIRQTP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEECCCH
LLLQLMFWYFVGFLGLKDNMFIQIKNIFNISNKGIEFSGLTFSSEFLALLFGLSIFTSAY
HHHHHHHHHHHHHHCCCCCEEEEEEEHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
IAEVIRGGILSVSRGQWEAFRSLGISERKGLIRIILPQALPAIIPGLTSQYLNLAKNSTL
HHHHHCCCCEECCCCHHHHHHHCCCHHHCCEEEEECHHHHHHHHCCHHHHHHHHHCCCEE
AIAVGYSDIYAINDTIINQTGRAIECFIILLFSFLLLNLLITNAMEIINRLILKSQRYS
EEEECCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]