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The map label for this gene is yhdY [H]

Identifier: 124026132

GI number: 124026132

Start: 1152726

End: 1153760

Strand: Reverse

Name: yhdY [H]

Synonym: NATL1_14251

Alternate gene names: 124026132

Gene position: 1153760-1152726 (Counterclockwise)

Preceding gene: 124026133

Following gene: 124026131

Centisome position: 61.87

GC content: 34.4

Gene sequence:

>1035_bases
ATGTTCGGAATTTATACAAGTTCATTAATAATTTTCTTCAAGAATGCAAGAAAAACATTGTTTTCAAATTTATTCAATAC
AATTATTACTTTGCTCATTATATTATTTATTAGCGTAGCTTGTTTTAATACTTTTGAATGGCTCATATATAAGGCTAATT
GGAAAGTTGTAATATCAAATCTTCCTTTATACGCATTTGGTAGTTTTCCATCTAATGAACAATGGAGACCTGCTACTTGG
ATCATCAGTCTTCTTTCACTCAGTATCTTTACTCTTTATGGTCCTGAGTGGAAATGGCTACGTAAAAACCTACTAATAGT
GTGGGTAGGAACAATACCATTGGGTCTATATTTACTTTATGGTGGAATTGGCTTATCGCCTATAATGAGTAGACAATGGG
GTGGATTAACTCTAACTATACTGCTAACTGTTTGTAGCTCGTTATTTTCATTACCTATTGGAATAGTTTTAGCACTATGT
CGACATAGTTCATTACCAATAATTCAAAAGCTAAGTTCAATCTTTATAGATGTTATGAGAGCAATACCGCTTATTGCAGT
GCTTTTCTTTGGTCAACTACTAATACCTTTATTTCTCCCAGTTGAAATAGAAATTGATCGGGTTTGGAGAGCTATCTTTG
CGTTTACGCTATTTGTCTCAGCGTACATAGCGGAAGACATTCGTGGCGGACTACAGTCAATTCCCAACACTCAAATAGAG
GCAGCAAATAGTCTTGGCCTTAATCAATACCAAATTATACAATTCATATTAATTCCTCAAGCTTTACGCATTGCATTACC
TGCTCTCACTAATCAATCCATTGGACTTTTTCAAAATACATCGTTAATGGCTATTTTAGGGTTAGTGGAGTTACTAGGCA
TAGGCAGAAGTATCCTGGCTAATCCAGAATTTATTGGTCAATATATTGAAGTTTATGTTTGGCTAGCGTGTGTCTATTGG
ATCGTTTGTACAATCATGGCTGTTCTTGCAAGACATCTTGAACAAAGAATGACCATTAATCAAGCTAATTTCTAA

Upstream 100 bases:

>100_bases
TATATTACTTTTTAGCTTCTTGCTATTAAATTTATTAATAACTAATGCCATGGAAATCATAAATAGATTGATTTTAAAAT
CACAAAGATACAGTTGACAT

Downstream 100 bases:

>100_bases
TAATTCATGGAACCAATTCTTGTTGCAAAGAATCTCACTAAGTCTTACACAAAAGGATTACGAGCTCTCGACAATGTTTC
TCTTACAGTTAATCAAGGGA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MFGIYTSSLIIFFKNARKTLFSNLFNTIITLLIILFISVACFNTFEWLIYKANWKVVISNLPLYAFGSFPSNEQWRPATW
IISLLSLSIFTLYGPEWKWLRKNLLIVWVGTIPLGLYLLYGGIGLSPIMSRQWGGLTLTILLTVCSSLFSLPIGIVLALC
RHSSLPIIQKLSSIFIDVMRAIPLIAVLFFGQLLIPLFLPVEIEIDRVWRAIFAFTLFVSAYIAEDIRGGLQSIPNTQIE
AANSLGLNQYQIIQFILIPQALRIALPALTNQSIGLFQNTSLMAILGLVELLGIGRSILANPEFIGQYIEVYVWLACVYW
IVCTIMAVLARHLEQRMTINQANF

Sequences:

>Translated_344_residues
MFGIYTSSLIIFFKNARKTLFSNLFNTIITLLIILFISVACFNTFEWLIYKANWKVVISNLPLYAFGSFPSNEQWRPATW
IISLLSLSIFTLYGPEWKWLRKNLLIVWVGTIPLGLYLLYGGIGLSPIMSRQWGGLTLTILLTVCSSLFSLPIGIVLALC
RHSSLPIIQKLSSIFIDVMRAIPLIAVLFFGQLLIPLFLPVEIEIDRVWRAIFAFTLFVSAYIAEDIRGGLQSIPNTQIE
AANSLGLNQYQIIQFILIPQALRIALPALTNQSIGLFQNTSLMAILGLVELLGIGRSILANPEFIGQYIEVYVWLACVYW
IVCTIMAVLARHLEQRMTINQANF
>Mature_344_residues
MFGIYTSSLIIFFKNARKTLFSNLFNTIITLLIILFISVACFNTFEWLIYKANWKVVISNLPLYAFGSFPSNEQWRPATW
IISLLSLSIFTLYGPEWKWLRKNLLIVWVGTIPLGLYLLYGGIGLSPIMSRQWGGLTLTILLTVCSSLFSLPIGIVLALC
RHSSLPIIQKLSSIFIDVMRAIPLIAVLFFGQLLIPLFLPVEIEIDRVWRAIFAFTLFVSAYIAEDIRGGLQSIPNTQIE
AANSLGLNQYQIIQFILIPQALRIALPALTNQSIGLFQNTSLMAILGLVELLGIGRSILANPEFIGQYIEVYVWLACVYW
IVCTIMAVLARHLEQRMTINQANF

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=344, Percent_Identity=34.8837209302326, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=32.6923076923077, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1788226, Length=207, Percent_Identity=32.3671497584541, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=30.7317073170732, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786874, Length=187, Percent_Identity=26.7379679144385, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI48994930, Length=126, Percent_Identity=35.7142857142857, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788645, Length=213, Percent_Identity=28.6384976525822, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787087, Length=222, Percent_Identity=24.3243243243243, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788646, Length=167, Percent_Identity=26.9461077844311, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38833; Mature: 38833

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGIYTSSLIIFFKNARKTLFSNLFNTIITLLIILFISVACFNTFEWLIYKANWKVVISN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEC
LPLYAFGSFPSNEQWRPATWIISLLSLSIFTLYGPEWKWLRKNLLIVWVGTIPLGLYLLY
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEEEECHHHHHHHHHH
GGIGLSPIMSRQWGGLTLTILLTVCSSLFSLPIGIVLALCRHSSLPIIQKLSSIFIDVMR
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AIPLIAVLFFGQLLIPLFLPVEIEIDRVWRAIFAFTLFVSAYIAEDIRGGLQSIPNTQIE
HHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AANSLGLNQYQIIQFILIPQALRIALPALTNQSIGLFQNTSLMAILGLVELLGIGRSILA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHC
NPEFIGQYIEVYVWLACVYWIVCTIMAVLARHLEQRMTINQANF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFGIYTSSLIIFFKNARKTLFSNLFNTIITLLIILFISVACFNTFEWLIYKANWKVVISN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEC
LPLYAFGSFPSNEQWRPATWIISLLSLSIFTLYGPEWKWLRKNLLIVWVGTIPLGLYLLY
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEEEECHHHHHHHHHH
GGIGLSPIMSRQWGGLTLTILLTVCSSLFSLPIGIVLALCRHSSLPIIQKLSSIFIDVMR
CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AIPLIAVLFFGQLLIPLFLPVEIEIDRVWRAIFAFTLFVSAYIAEDIRGGLQSIPNTQIE
HHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AANSLGLNQYQIIQFILIPQALRIALPALTNQSIGLFQNTSLMAILGLVELLGIGRSILA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHC
NPEFIGQYIEVYVWLACVYWIVCTIMAVLARHLEQRMTINQANF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]