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The map label for this gene is ygaF [H]

Identifier: 124025683

GI number: 124025683

Start: 895459

End: 896013

Strand: Reverse

Name: ygaF [H]

Synonym: NATL1_09761

Alternate gene names: 124025683

Gene position: 896013-895459 (Counterclockwise)

Preceding gene: 124025685

Following gene: 124025682

Centisome position: 48.05

GC content: 29.19

Gene sequence:

>555_bases
ATGAAAAGAAGTGAATTTATAAAATCCTTTATTTTATTTTCTAGTATTTTATTTATTAAACCTTCGAGACTATATGCAAG
TATAAATTCAGTTAAAATTGGCAAAAAGGCACCCAATTTTTTGTTGAATGGATATAACAAAAACAGCCCAAATAAAAAGC
AATGGTCATTGGATGATTTTTCAAAAAAATGGTTAGTTTTATATTTTTATCCTAAAGATTTCTCAAGTGGTTGTACATTA
GAGGCTAAAAATTTTCAGGATAATCTTTCTAACTATAATAAAATCAATGCCTCAATAGTTGGGATCAGTGCAGATAGTGA
AGAAGAGCACGAATCATTTTGTACATCCGAAAATCTTGGATATACATTACTATCAGATGCAAATTCAGAAATTAGCAAGT
CATACGATTCATGGTTAGATCCCTACTCAAAAAGAAATACATTTCTGATCAACCCAGAAGGTATAGTTGTATATAAATGG
ATAGGAGTAAGACCAATTGGACATGCTCAAGAAGTTTTAAAAGAGCTTACTAAACAACAAAAAATATATGCATGA

Upstream 100 bases:

>100_bases
ACGACAAGAGCACTAAAAACTATTCAGAAAAAAGGTTTAGGAAAATATGCCAAATCATTAGGGGTTGATTTAAACAAACT
TTAAATTTGATTTTTATCAA

Downstream 100 bases:

>100_bases
ACTATCTTTAGGAACATGGTTTATCCATATTGCGACTCTATTTGAGTGGGCAATTGCAATAATAATAATTGACTATATTT
CATCAATAACCAATAACAAG

Product: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergens family protein

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKRSEFIKSFILFSSILFIKPSRLYASINSVKIGKKAPNFLLNGYNKNSPNKKQWSLDDFSKKWLVLYFYPKDFSSGCTL
EAKNFQDNLSNYNKINASIVGISADSEEEHESFCTSENLGYTLLSDANSEISKSYDSWLDPYSKRNTFLINPEGIVVYKW
IGVRPIGHAQEVLKELTKQQKIYA

Sequences:

>Translated_184_residues
MKRSEFIKSFILFSSILFIKPSRLYASINSVKIGKKAPNFLLNGYNKNSPNKKQWSLDDFSKKWLVLYFYPKDFSSGCTL
EAKNFQDNLSNYNKINASIVGISADSEEEHESFCTSENLGYTLLSDANSEISKSYDSWLDPYSKRNTFLINPEGIVVYKW
IGVRPIGHAQEVLKELTKQQKIYA
>Mature_184_residues
MKRSEFIKSFILFSSILFIKPSRLYASINSVKIGKKAPNFLLNGYNKNSPNKKQWSLDDFSKKWLVLYFYPKDFSSGCTL
EAKNFQDNLSNYNKINASIVGISADSEEEHESFCTSENLGYTLLSDANSEISKSYDSWLDPYSKRNTFLINPEGIVVYKW
IGVRPIGHAQEVLKELTKQQKIYA

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI5802974, Length=162, Percent_Identity=30.8641975308642, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI32483377, Length=135, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI5453549, Length=151, Percent_Identity=31.1258278145695, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4505591, Length=152, Percent_Identity=28.2894736842105, Blast_Score=64, Evalue=1e-10,
Organism=Homo sapiens, GI32455266, Length=152, Percent_Identity=28.2894736842105, Blast_Score=64, Evalue=1e-10,
Organism=Homo sapiens, GI32455264, Length=152, Percent_Identity=28.2894736842105, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1788825, Length=154, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=5e-16,
Organism=Drosophila melanogaster, GI17738015, Length=162, Percent_Identity=32.7160493827161, Blast_Score=90, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24656348, Length=146, Percent_Identity=28.7671232876712, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17864676, Length=146, Percent_Identity=28.7671232876712, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 21122; Mature: 21122

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSEFIKSFILFSSILFIKPSRLYASINSVKIGKKAPNFLLNGYNKNSPNKKQWSLDDF
CCHHHHHHHHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCEEECCCCCCCCCCCCCCCCC
SKKWLVLYFYPKDFSSGCTLEAKNFQDNLSNYNKINASIVGISADSEEEHESFCTSENLG
CCCEEEEEEECCCCCCCCEEEECCCHHHHCCCCCCCEEEEEEECCCCHHHHHHCCCCCCC
YTLLSDANSEISKSYDSWLDPYSKRNTFLINPEGIVVYKWIGVRPIGHAQEVLKELTKQQ
EEEECCCCHHHHHHHHHHCCCHHCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHH
KIYA
CCCC
>Mature Secondary Structure
MKRSEFIKSFILFSSILFIKPSRLYASINSVKIGKKAPNFLLNGYNKNSPNKKQWSLDDF
CCHHHHHHHHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCEEECCCCCCCCCCCCCCCCC
SKKWLVLYFYPKDFSSGCTLEAKNFQDNLSNYNKINASIVGISADSEEEHESFCTSENLG
CCCEEEEEEECCCCCCCCEEEECCCHHHHCCCCCCCEEEEEEECCCCHHHHHHCCCCCCC
YTLLSDANSEISKSYDSWLDPYSKRNTFLINPEGIVVYKWIGVRPIGHAQEVLKELTKQQ
EEEECCCCHHHHHHHHHHCCCHHCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHH
KIYA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]