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The map label for this gene is ndhM

Identifier: 124024930

GI number: 124024930

Start: 202273

End: 202620

Strand: Direct

Name: ndhM

Synonym: NATL1_02171

Alternate gene names: 124024930

Gene position: 202273-202620 (Clockwise)

Preceding gene: 124024927

Following gene: 124024931

Centisome position: 10.85

GC content: 33.05

Gene sequence:

>348_bases
ATGAGCGATACTATTCTCAAATGCACAACAAGACATGTCAGAATATTTACTGCAGTTGTAGAAAATAATGATTTAATTTT
AGATAATGGGCATCTGACTTTAGATATTGACCCAGATAATGAATTTTCTTGGAGCGATCAATCTATAAAAAAGGTGCAAG
ATTATTTTCGTGAATTAGTTGAGTTGCAAGCCGATAATGAATTAAGTGATTACACCTTGAGAAAAATAGGATCCCTGCTT
GAGGATTTTATTAGAAAGTTGCTCAAAGATGGAGAGCTCAGTTATAACCCAAATAGTAGGGTAATGAACTATTCCATGGG
ATTACCTAGAACTCAAGAATTATTATGA

Upstream 100 bases:

>100_bases
AAATAAAAGAGTATTTAACAACTTTAGTGATTAAGACCACCCAAGAAGGGTTTAGGTCGTTAAATTTGCAGTATATATTT
TGGTTTGTTGTTTTAAATTC

Downstream 100 bases:

>100_bases
ATCAAGGTCCTTATAATCGAAGACCATCATCTCGTAGAAGATCAGATTTGGCGAGAAGACAAGAAGGGAACAGATTTAAT
TCTAGAAAAGATTCAAATGT

Product: NADH dehydrogenase I subunit M

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase I subunit M; NDH-1 subunit M; NDH-M

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSDTILKCTTRHVRIFTAVVENNDLILDNGHLTLDIDPDNEFSWSDQSIKKVQDYFRELVELQADNELSDYTLRKIGSLL
EDFIRKLLKDGELSYNPNSRVMNYSMGLPRTQELL

Sequences:

>Translated_115_residues
MSDTILKCTTRHVRIFTAVVENNDLILDNGHLTLDIDPDNEFSWSDQSIKKVQDYFRELVELQADNELSDYTLRKIGSLL
EDFIRKLLKDGELSYNPNSRVMNYSMGLPRTQELL
>Mature_114_residues
SDTILKCTTRHVRIFTAVVENNDLILDNGHLTLDIDPDNEFSWSDQSIKKVQDYFRELVELQADNELSDYTLRKIGSLLE
DFIRKLLKDGELSYNPNSRVMNYSMGLPRTQELL

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I ndhM subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDHM_PROM1 (A2BZX1)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001014046.1
- STRING:   A2BZX1
- GeneID:   4779297
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_02171
- eggNOG:   NOG08035
- HOGENOM:   HBG286965
- OMA:   NYSMGLP
- ProtClustDB:   CLSK893267
- BioCyc:   PMAR167555:NATL1_02171-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01352
- InterPro:   IPR018922

Pfam domain/function: PF10664 DUF2485

EC number: 1.6.5.3

Molecular weight: Translated: 13382; Mature: 13251

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTILKCTTRHVRIFTAVVENNDLILDNGHLTLDIDPDNEFSWSDQSIKKVQDYFRELV
CCCCHHHHCCHHEEEEEEEECCCCEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
ELQADNELSDYTLRKIGSLLEDFIRKLLKDGELSYNPNSRVMNYSMGLPRTQELL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHCC
>Mature Secondary Structure 
SDTILKCTTRHVRIFTAVVENNDLILDNGHLTLDIDPDNEFSWSDQSIKKVQDYFRELV
CCCHHHHCCHHEEEEEEEECCCCEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
ELQADNELSDYTLRKIGSLLEDFIRKLLKDGELSYNPNSRVMNYSMGLPRTQELL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA