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The map label for this gene is pds [H]

Identifier: 124024929

GI number: 124024929

Start: 200780

End: 202168

Strand: Reverse

Name: pds [H]

Synonym: NATL1_02161

Alternate gene names: 124024929

Gene position: 202168-200780 (Counterclockwise)

Preceding gene: 124024932

Following gene: 124024928

Centisome position: 10.84

GC content: 38.52

Gene sequence:

>1389_bases
ATGCGCGTAGCAATCGCTGGAGCCGGATTGGCAGGACTCTCATGTGCAAAATACTTAGCCGATGCTGGTCATACGCCATT
TGTTTATGAAGCAAGAAACGTACTTGGCGGAAAAGTTGCTGCTTGGAAAGATGATGATGGTGACTGGTATGAGACTGGAT
TACATATATTTTTTGGAGCTTATCCAAATATGCTCCAGCTTTTTAAAGAACTAGATATTGAAGATCGTCTTCAATGGAAA
AGTCATTCCATGATTTTCAACCAACCAGAAGAACCTGGGACATATAGCCGTTTCGACTTCCCTGATCTTCCTGCTCCAAT
CAATGGAGTGGCAGCGATTTTAAGCAACAATGACATGCTTAGCTGGCCAGAAAAAATTTCGTTTGGACTGGGACTAGTAC
CAGCTATGTTGCGTGGCCAAAATTATGTAGAGGATTGTGATAAGTACTCTTGGACGGAATGGCTGAAAAAACAAAATATC
CCCGAAAGAGTCAATGATGAAGTTTTTATAGCAATGAGTAAGGCACTTAATTTTATAGGTCCTGATGAAATTTCCTCAAC
AGTATTGCTAACTGCATTAAACCGCTTCTTACAAGAAAAAAACGGATCAAAAATGGCATTTCTTGATGGAGCTCCACCAG
AACGACTTTGTCAACCAATTGTTGATCACATCAGAGCTTTAGGAGGCGACGTATTTTTAAATAGCCCACTAAAAAAAATA
AATTTACAACAAGATGGATCTGTTGAAAATTTCTTAATAGGTAGTGCCAAAGAACCTCAGGGAAAAGAAATCCAAGCAGA
CGCGTATGTCAGCGCAATGCCCGTTGATATTTTCAAAACAATTTTGCCCAATGAATGGGCCTCTCAAGATATTTTCAGAA
AACTTGAGGGACTGAAAGGAGTCCCAGTTATTAATATTCATCTTTGGTTCGATCGAAAACTTACAAATATTGATCACCTG
TTATTCAGCAGATCTCCACTTTTAAGTGTCTATGCCGACATGAGCATAACTTGTAAAGAATATGAAGATCCCAATCGATC
AATGCTTGAATTAGTTTTTGCTCCTGCAAAAGACTGGATTGGTCGTAAAGACGAGGAAATAATTGATGCAACAATGCAAG
AATTGAAGAAACTTTTTCCCATGCATTTCTCTGGGGAAAATCAAGCTAAATTGAGAAAATATAAAGTAATAAAAACACCA
AAATCAGTCTACAAAGCTGTTCCTGGATGCCAAGATTTAAGGCCAGACCAAAAGACTCCAATAAGAAACTTTTTCTTAAC
TGGTGATTACACAATGCAAAAATACCTCGCTTCCATGGAAGGTGCAGTCCTAAGTGGAAAAATATGTGCAGAAAAAATCC
AAATCTCGACTGACATAGGTTCTTCTTAG

Upstream 100 bases:

>100_bases
TTAAAACAACAAACCAAAATATATACTGCAAATTTAACGACCTAAACCCTTCTTGGGTGGTCTTAATCACTAAAGTTGTT
AAATACTCTTTTATTTAGGT

Downstream 100 bases:

>100_bases
TCTTAATGTAACAACAGGAATTTATTTAAAATTGCTACTCAGGAGCTAAATGCAAACTAAAAAACTTACAAACTTCTAAT
TTTGGCGCAGCCTTATTTGA

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MRVAIAGAGLAGLSCAKYLADAGHTPFVYEARNVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPEEPGTYSRFDFPDLPAPINGVAAILSNNDMLSWPEKISFGLGLVPAMLRGQNYVEDCDKYSWTEWLKKQNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDHIRALGGDVFLNSPLKKI
NLQQDGSVENFLIGSAKEPQGKEIQADAYVSAMPVDIFKTILPNEWASQDIFRKLEGLKGVPVINIHLWFDRKLTNIDHL
LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWIGRKDEEIIDATMQELKKLFPMHFSGENQAKLRKYKVIKTP
KSVYKAVPGCQDLRPDQKTPIRNFFLTGDYTMQKYLASMEGAVLSGKICAEKIQISTDIGSS

Sequences:

>Translated_462_residues
MRVAIAGAGLAGLSCAKYLADAGHTPFVYEARNVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPEEPGTYSRFDFPDLPAPINGVAAILSNNDMLSWPEKISFGLGLVPAMLRGQNYVEDCDKYSWTEWLKKQNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDHIRALGGDVFLNSPLKKI
NLQQDGSVENFLIGSAKEPQGKEIQADAYVSAMPVDIFKTILPNEWASQDIFRKLEGLKGVPVINIHLWFDRKLTNIDHL
LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWIGRKDEEIIDATMQELKKLFPMHFSGENQAKLRKYKVIKTP
KSVYKAVPGCQDLRPDQKTPIRNFFLTGDYTMQKYLASMEGAVLSGKICAEKIQISTDIGSS
>Mature_462_residues
MRVAIAGAGLAGLSCAKYLADAGHTPFVYEARNVLGGKVAAWKDDDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK
SHSMIFNQPEEPGTYSRFDFPDLPAPINGVAAILSNNDMLSWPEKISFGLGLVPAMLRGQNYVEDCDKYSWTEWLKKQNI
PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDHIRALGGDVFLNSPLKKI
NLQQDGSVENFLIGSAKEPQGKEIQADAYVSAMPVDIFKTILPNEWASQDIFRKLEGLKGVPVINIHLWFDRKLTNIDHL
LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWIGRKDEEIIDATMQELKKLFPMHFSGENQAKLRKYKVIKTP
KSVYKAVPGCQDLRPDQKTPIRNFFLTGDYTMQKYLASMEGAVLSGKICAEKIQISTDIGSS

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: 1.3.99.-

Molecular weight: Translated: 51948; Mature: 51948

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAIAGAGLAGLSCAKYLADAGHTPFVYEARNVLGGKVAAWKDDDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHHCCCCCEEEEHHHHCCCCEEEEECCCCCHHHHCCCEEECC
YPNMLQLFKELDIEDRLQWKSHSMIFNQPEEPGTYSRFDFPDLPAPINGVAAILSNNDML
CHHHHHHHHHCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
SWPEKISFGLGLVPAMLRGQNYVEDCDKYSWTEWLKKQNIPERVNDEVFIAMSKALNFIG
CCHHHHHCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC
PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDHIRALGGDVFLNSPLKKI
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCHHHC
NLQQDGSVENFLIGSAKEPQGKEIQADAYVSAMPVDIFKTILPNEWASQDIFRKLEGLKG
CCCCCCCCCCEEECCCCCCCCCEEECCHHHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCC
VPVINIHLWFDRKLTNIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHCCHHHC
GRKDEEIIDATMQELKKLFPMHFSGENQAKLRKYKVIKTPKSVYKAVPGCQDLRPDQKTP
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCHHHCCCCCCCC
IRNFFLTGDYTMQKYLASMEGAVLSGKICAEKIQISTDIGSS
CCEEEECCCHHHHHHHHHHCCCCEECHHHHHHEEEECCCCCC
>Mature Secondary Structure
MRVAIAGAGLAGLSCAKYLADAGHTPFVYEARNVLGGKVAAWKDDDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHHCCCCCEEEEHHHHCCCCEEEEECCCCCHHHHCCCEEECC
YPNMLQLFKELDIEDRLQWKSHSMIFNQPEEPGTYSRFDFPDLPAPINGVAAILSNNDML
CHHHHHHHHHCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
SWPEKISFGLGLVPAMLRGQNYVEDCDKYSWTEWLKKQNIPERVNDEVFIAMSKALNFIG
CCHHHHHCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC
PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPIVDHIRALGGDVFLNSPLKKI
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCHHHC
NLQQDGSVENFLIGSAKEPQGKEIQADAYVSAMPVDIFKTILPNEWASQDIFRKLEGLKG
CCCCCCCCCCEEECCCCCCCCCEEECCHHHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCC
VPVINIHLWFDRKLTNIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHCCHHHC
GRKDEEIIDATMQELKKLFPMHFSGENQAKLRKYKVIKTPKSVYKAVPGCQDLRPDQKTP
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCHHHCCCCCCCC
IRNFFLTGDYTMQKYLASMEGAVLSGKICAEKIQISTDIGSS
CCEEEECCCHHHHHHHHHHCCCCEECHHHHHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]