Click here to switch to the map view.

The map label for this gene is crtB [H]

Identifier: 124024928

GI number: 124024928

Start: 199760

End: 200698

Strand: Reverse

Name: crtB [H]

Synonym: NATL1_02151

Alternate gene names: 124024928

Gene position: 200698-199760 (Counterclockwise)

Preceding gene: 124024929

Following gene: 124024925

Centisome position: 10.76

GC content: 38.13

Gene sequence:

>939_bases
TTGGCGCAGCCTTATTTGAATCTAGAGGATGCCTACGAGGCTTGCAGAAAAGAAACTGCACAATGGGCTAAGACCTTCTA
CCTAGGGACTATGTTGCTGCCCCCTGCTAAACGCAGAGCAATCTGGGCTATTTATGTTTGGTGCCGAAGAACAGATGAGC
TAATGGACAGCACTGAAGCTCAAAAAAAATCTCGAAATGAGTTATCAGATAGACTCAACCAATGGGAAGACAAAACAAAA
AATATTTTTGCTGGTAATACTCAAGATGATCTTGATGCTGTCTTAGCCGATACTCTTCAAAAATTTCCTCAGTCTATTCA
GCCTTACATAGATATGATTGAAGGCCAGAGAATGGATTTAGATAAAACCAGATACAAAACCTTTGAAGAACTTGAACTGT
ACTGTTATCGAGTCGCTGGAACTGTTGGGTTGATGACGCAAGGTGTAATAGGTATTGATGCTGCCTATACCCGTAATCCA
AATTTGCCACCTCCTGATACTTCACGAGCAGCCATAGCTCTAGGAATCGCGAATCAATTAACTAATATTCTTAGAGATGT
TGGAGAAGATAGAGGTAGAGGAAGGATTTATTTGCCATTAGAGGATTTGAAAAAATTTAATTACTCCGAAGAAGATCTAT
TTAAAGGAACAATTAATGAAAACTGGAAAGCTTTAATGGCTTTTCAATTAGCCAGAGCTAGAGATTGGTTCCAGAAATCT
GAAGAAGGCATCAAATGGCTATCAATAGATGCAAGGTGGCCTATATGGACCTCATTAAGGCTATATAGCGGAATATTAAA
TTCAATTGAAAAAATTGATTATGACGTCTTCAGCAATCGAGCTTATGTAAAAGGATGGGTCAAAGCTGTAAACCTACCCA
TCTCCTATCTAATAACCATCAACGATGAAAAATATAAACTTAGAACACTAATTAATTGA

Upstream 100 bases:

>100_bases
TGACATAGGTTCTTCTTAGTCTTAATGTAACAACAGGAATTTATTTAAAATTGCTACTCAGGAGCTAAATGCAAACTAAA
AAACTTACAAACTTCTAATT

Downstream 100 bases:

>100_bases
ACATTTAAGCGGGAGTTTTTTGATTGGCTAAAAGATCTTTTAATTTTGATAGTTCTCCAGCCCATCTTGGATCTGGAGCT
TCTTTAATTGGCGCATCGCT

Product: squalene and phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAQPYLNLEDAYEACRKETAQWAKTFYLGTMLLPPAKRRAIWAIYVWCRRTDELMDSTEAQKKSRNELSDRLNQWEDKTK
NIFAGNTQDDLDAVLADTLQKFPQSIQPYIDMIEGQRMDLDKTRYKTFEELELYCYRVAGTVGLMTQGVIGIDAAYTRNP
NLPPPDTSRAAIALGIANQLTNILRDVGEDRGRGRIYLPLEDLKKFNYSEEDLFKGTINENWKALMAFQLARARDWFQKS
EEGIKWLSIDARWPIWTSLRLYSGILNSIEKIDYDVFSNRAYVKGWVKAVNLPISYLITINDEKYKLRTLIN

Sequences:

>Translated_312_residues
MAQPYLNLEDAYEACRKETAQWAKTFYLGTMLLPPAKRRAIWAIYVWCRRTDELMDSTEAQKKSRNELSDRLNQWEDKTK
NIFAGNTQDDLDAVLADTLQKFPQSIQPYIDMIEGQRMDLDKTRYKTFEELELYCYRVAGTVGLMTQGVIGIDAAYTRNP
NLPPPDTSRAAIALGIANQLTNILRDVGEDRGRGRIYLPLEDLKKFNYSEEDLFKGTINENWKALMAFQLARARDWFQKS
EEGIKWLSIDARWPIWTSLRLYSGILNSIEKIDYDVFSNRAYVKGWVKAVNLPISYLITINDEKYKLRTLIN
>Mature_311_residues
AQPYLNLEDAYEACRKETAQWAKTFYLGTMLLPPAKRRAIWAIYVWCRRTDELMDSTEAQKKSRNELSDRLNQWEDKTKN
IFAGNTQDDLDAVLADTLQKFPQSIQPYIDMIEGQRMDLDKTRYKTFEELELYCYRVAGTVGLMTQGVIGIDAAYTRNPN
LPPPDTSRAAIALGIANQLTNILRDVGEDRGRGRIYLPLEDLKKFNYSEEDLFKGTINENWKALMAFQLARARDWFQKSE
EGIKWLSIDARWPIWTSLRLYSGILNSIEKIDYDVFSNRAYVKGWVKAVNLPISYLITINDEKYKLRTLIN

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 36257; Mature: 36126

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPYLNLEDAYEACRKETAQWAKTFYLGTMLLPPAKRRAIWAIYVWCRRTDELMDSTEA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEHEEHHCHHHHHHHHHH
QKKSRNELSDRLNQWEDKTKNIFAGNTQDDLDAVLADTLQKFPQSIQPYIDMIEGQRMDL
HHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DKTRYKTFEELELYCYRVAGTVGLMTQGVIGIDAAYTRNPNLPPPDTSRAAIALGIANQL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHEEHHHHHHH
TNILRDVGEDRGRGRIYLPLEDLKKFNYSEEDLFKGTINENWKALMAFQLARARDWFQKS
HHHHHHHCCCCCCCEEEEEHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
EEGIKWLSIDARWPIWTSLRLYSGILNSIEKIDYDVFSNRAYVKGWVKAVNLPISYLITI
HCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEE
NDEKYKLRTLIN
CCCCEEEEECCC
>Mature Secondary Structure 
AQPYLNLEDAYEACRKETAQWAKTFYLGTMLLPPAKRRAIWAIYVWCRRTDELMDSTEA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEHEEHHCHHHHHHHHHH
QKKSRNELSDRLNQWEDKTKNIFAGNTQDDLDAVLADTLQKFPQSIQPYIDMIEGQRMDL
HHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DKTRYKTFEELELYCYRVAGTVGLMTQGVIGIDAAYTRNPNLPPPDTSRAAIALGIANQL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHEEHHHHHHH
TNILRDVGEDRGRGRIYLPLEDLKKFNYSEEDLFKGTINENWKALMAFQLARARDWFQKS
HHHHHHHCCCCCCCEEEEEHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
EEGIKWLSIDARWPIWTSLRLYSGILNSIEKIDYDVFSNRAYVKGWVKAVNLPISYLITI
HCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEE
NDEKYKLRTLIN
CCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8018713; 8905231 [H]