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The map label for this gene is 124028416

Identifier: 124028416

GI number: 124028416

Start: 1579947

End: 1580180

Strand: Direct

Name: 124028416

Synonym: Hbut_1570

Alternate gene names: NA

Gene position: 1579947-1580180 (Clockwise)

Preceding gene: 124028414

Following gene: 124028417

Centisome position: 94.77

GC content: 51.28

Gene sequence:

>234_bases
ATGGCTGAGACAACACACCGTATACTCGGCGACAGTATTGGGAGTATAGTCCTCGTAAAGCTCAAGGGTGCAAACGAAGT
TCGCGGAAGACTGAAGAGCTACGATCAGCACCTTAACCTGGTCCTCGAGGATGCCGAAGAGATATACGAGGATGGCCGCA
CAAGAAAGCTCGGCACAATAGTTATTCGCGGCGACACAGTGCTCCTCATATCGCCAGCACAAATCCAGAGCTAA

Upstream 100 bases:

>100_bases
TGATAGCTGCCATCGCCTCAACAACCATCAACCCGGTATGAGGGGCTAGGAGAATCTCCTATAAAGCCCCTGGGGGATAG
GGCCTCGCGGGGTGCGCGGA

Downstream 100 bases:

>100_bases
GTAGAGCACAAGAGATATACGCTAACAAGCACACCGGGCTGGAGGGGGGAATACTCCTTGGGTAAGGGTACACCATCCTT
CGGCAAGATGAACAAAAACT

Product: putative snRNP Sm protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MAETTHRILGDSIGSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYEDGRTRKLGTIVIRGDTVLLISPAQIQS

Sequences:

>Translated_77_residues
MAETTHRILGDSIGSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYEDGRTRKLGTIVIRGDTVLLISPAQIQS
>Mature_76_residues
AETTHRILGDSIGSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYEDGRTRKLGTIVIRGDTVLLISPAQIQS

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the snRNP Sm proteins family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR001163
- InterPro:   IPR006649
- InterPro:   IPR022901 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8516; Mature: 8385

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETTHRILGDSIGSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYEDGRTRKLGTI
CCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VIRGDTVLLISPAQIQS
EECCCEEEEECCCCCCC
>Mature Secondary Structure 
AETTHRILGDSIGSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYEDGRTRKLGTI
CCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VIRGDTVLLISPAQIQS
EECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA