Click here to switch to the map view.

The map label for this gene is ygbD [C]

Identifier: 124027406

GI number: 124027406

Start: 503040

End: 504194

Strand: Direct

Name: ygbD [C]

Synonym: Hbut_0519

Alternate gene names: 124027406

Gene position: 503040-504194 (Clockwise)

Preceding gene: 124027405

Following gene: 124027407

Centisome position: 30.17

GC content: 53.51

Gene sequence:

>1155_bases
ATGGCTAAGAAGATAGTTATACTCGGAGGCGGCGCTGGTGGTGTTATTGCTGCCAGGAGACTGAGGGAGGTTCTGAAGCC
CGAGGAGGCCGAGATAACGTTAATAGATAAGAGTGAGTTCCATGAGTTTCGGCCATCCTATCTCTGGGTCATGACTGGGA
TAAGGGAGCCTGATGACATAAGGAGGCCCTTGAGAACCCTTGAGAAATACAAGATAAACTTCGTACAGGATGAAGTGACC
GAGATAGATCCGGCAAACAGAACAGTGAAGGGCAAGAAGGGGTCCTATGAGTATGACTATCTCATAGTGGCATTGGGAGC
CGCTCTGAAGGAGGAGATAGAAGCACCTGGGGTATGTGCACCCTGGAGCATGGAAGGGGCTCTTCGCTGCAAATCGATAC
TGTCGGAGCTAAGATCCCCTAGCGTGAAGATCGTAATAGGGCCTGCCTCATGGCCTTACCGCTGTCCCCCAGCGCCCTTC
GAGGTTGCGTTCCTGCTGAAGTACCTTATGGAGCAGCGTGGAGTCAAAGCTGACATCAAGGTCTTCCACATGTGGAGCAA
ACCCATGGAGCCTTTCGGCCCGCTAATGTCCTCTATGTTCAGCCAGATGCTCAACGAATACGGCATAGAGTTTGTGGGCG
GTGCCCAGTTCCAGGAGGTTGATGGTAGCTCCAAGAAGGTGAGGCTCTCCACAGGCGAACTAGAGTATGATATGGCTGTC
GTGATACCACCTCACGCGCCACCGGAGCCTGTGGCAAAGTCTGAGCTGGCAGACCAGCGGACAGGCTGGATGAAGGTAGA
GCTGCCGCACATGAGGAACCCCAAGTACAAGGAAGTGTTTGGCATAGGCGACGTAGTGAGTCCGACAATAGGGTTGAGCA
TGGCGGGTGTCTTCGCCCACTTCCAGGCAGAGCATGTGGCGAGCCAGATAGCCGATGAGATAAAGGGCGTCTACATGGGG
GAGCACTACAACATGAGCGGTATCTGTGTAATGGACCTAGGCTATATAGGTGCTGCAGTCTACTGTGACTTCTCCAAGAA
GCTCATGGAGAGAGCGCCTTATCCCGACTGTAGGATGCTAGGAGGCTCCAGGGCCTTCCGCGTAGTCAAGGCGGCTTTTG
AGAGGATGTGGTTCAGCAGCCTATTTGGCTACTAA

Upstream 100 bases:

>100_bases
TTAAAGTGCAAAAATCACAGTAATGTCCAGGAACATTTTTAAAGGCAAAAAGGCAAAGATATAGTAGAGTATGACAAAAT
AAATGTATGCGTGAGCTGCC

Downstream 100 bases:

>100_bases
GTGGAGGTGTCAAGTCATGAGTGCCCAGACGAATGAGGCGGTTTTAAAGGTTCTAGATAAACTGTCTCAGCTCAATCCAG
AGGAACTCGAGAGACTAGTG

Product: sulfide dehydrogenase flavoprotein

Products: NAD; reduced flavorubredoxin; H2O [C]

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MAKKIVILGGGAGGVIAARRLREVLKPEEAEITLIDKSEFHEFRPSYLWVMTGIREPDDIRRPLRTLEKYKINFVQDEVT
EIDPANRTVKGKKGSYEYDYLIVALGAALKEEIEAPGVCAPWSMEGALRCKSILSELRSPSVKIVIGPASWPYRCPPAPF
EVAFLLKYLMEQRGVKADIKVFHMWSKPMEPFGPLMSSMFSQMLNEYGIEFVGGAQFQEVDGSSKKVRLSTGELEYDMAV
VIPPHAPPEPVAKSELADQRTGWMKVELPHMRNPKYKEVFGIGDVVSPTIGLSMAGVFAHFQAEHVASQIADEIKGVYMG
EHYNMSGICVMDLGYIGAAVYCDFSKKLMERAPYPDCRMLGGSRAFRVVKAAFERMWFSSLFGY

Sequences:

>Translated_384_residues
MAKKIVILGGGAGGVIAARRLREVLKPEEAEITLIDKSEFHEFRPSYLWVMTGIREPDDIRRPLRTLEKYKINFVQDEVT
EIDPANRTVKGKKGSYEYDYLIVALGAALKEEIEAPGVCAPWSMEGALRCKSILSELRSPSVKIVIGPASWPYRCPPAPF
EVAFLLKYLMEQRGVKADIKVFHMWSKPMEPFGPLMSSMFSQMLNEYGIEFVGGAQFQEVDGSSKKVRLSTGELEYDMAV
VIPPHAPPEPVAKSELADQRTGWMKVELPHMRNPKYKEVFGIGDVVSPTIGLSMAGVFAHFQAEHVASQIADEIKGVYMG
EHYNMSGICVMDLGYIGAAVYCDFSKKLMERAPYPDCRMLGGSRAFRVVKAAFERMWFSSLFGY
>Mature_383_residues
AKKIVILGGGAGGVIAARRLREVLKPEEAEITLIDKSEFHEFRPSYLWVMTGIREPDDIRRPLRTLEKYKINFVQDEVTE
IDPANRTVKGKKGSYEYDYLIVALGAALKEEIEAPGVCAPWSMEGALRCKSILSELRSPSVKIVIGPASWPYRCPPAPFE
VAFLLKYLMEQRGVKADIKVFHMWSKPMEPFGPLMSSMFSQMLNEYGIEFVGGAQFQEVDGSSKKVRLSTGELEYDMAVV
IPPHAPPEPVAKSELADQRTGWMKVELPHMRNPKYKEVFGIGDVVSPTIGLSMAGVFAHFQAEHVASQIADEIKGVYMGE
HYNMSGICVMDLGYIGAAVYCDFSKKLMERAPYPDCRMLGGSRAFRVVKAAFERMWFSSLFGY

Specific function: Unknown

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADH dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI10864011, Length=353, Percent_Identity=21.8130311614731, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534373, Length=302, Percent_Identity=23.5099337748344, Blast_Score=78, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17539680, Length=350, Percent_Identity=22, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24657386, Length=343, Percent_Identity=21.2827988338192, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24657391, Length=343, Percent_Identity=21.2827988338192, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: NA

Molecular weight: Translated: 43005; Mature: 42873

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKIVILGGGAGGVIAARRLREVLKPEEAEITLIDKSEFHEFRPSYLWVMTGIREPDDI
CCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCEEEEEECCCCCHHH
RRPLRTLEKYKINFVQDEVTEIDPANRTVKGKKGSYEYDYLIVALGAALKEEIEAPGVCA
HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PWSMEGALRCKSILSELRSPSVKIVIGPASWPYRCPPAPFEVAFLLKYLMEQRGVKADIK
CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
VFHMWSKPMEPFGPLMSSMFSQMLNEYGIEFVGGAQFQEVDGSSKKVRLSTGELEYDMAV
EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCCEEEEECCCEEEEEEE
VIPPHAPPEPVAKSELADQRTGWMKVELPHMRNPKYKEVFGIGDVVSPTIGLSMAGVFAH
EECCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCHHHHHCCCCHHCCHHHHHHHHHHHH
FQAEHVASQIADEIKGVYMGEHYNMSGICVMDLGYIGAAVYCDFSKKLMERAPYPDCRML
HHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEHHHHHHHEEECHHHHHHHHCCCCCHHHC
GGSRAFRVVKAAFERMWFSSLFGY
CCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKKIVILGGGAGGVIAARRLREVLKPEEAEITLIDKSEFHEFRPSYLWVMTGIREPDDI
CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCEEEEEECCCCCHHH
RRPLRTLEKYKINFVQDEVTEIDPANRTVKGKKGSYEYDYLIVALGAALKEEIEAPGVCA
HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PWSMEGALRCKSILSELRSPSVKIVIGPASWPYRCPPAPFEVAFLLKYLMEQRGVKADIK
CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
VFHMWSKPMEPFGPLMSSMFSQMLNEYGIEFVGGAQFQEVDGSSKKVRLSTGELEYDMAV
EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCCEEEEECCCEEEEEEE
VIPPHAPPEPVAKSELADQRTGWMKVELPHMRNPKYKEVFGIGDVVSPTIGLSMAGVFAH
EECCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCHHHHHCCCCHHCCHHHHHHHHHHHH
FQAEHVASQIADEIKGVYMGEHYNMSGICVMDLGYIGAAVYCDFSKKLMERAPYPDCRML
HHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEHHHHHHHEEECHHHHHHHHCCCCCHHHC
GGSRAFRVVKAAFERMWFSSLFGY
CCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; oxidized flavorubredoxin; O2 [C]

Specific reaction: NADH + oxidized flavorubredoxin + O2 = NAD + reduced flavorubredoxin + H2O [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]