Click here to switch to the map view.

The map label for this gene is 124027216

Identifier: 124027216

GI number: 124027216

Start: 309653

End: 310345

Strand: Direct

Name: 124027216

Synonym: Hbut_0319

Alternate gene names: NA

Gene position: 309653-310345 (Clockwise)

Preceding gene: 124027215

Following gene: 124027224

Centisome position: 18.57

GC content: 56.85

Gene sequence:

>693_bases
GTGGCTAGCCAGCGCTTGAAGCTTGTGCTCCTTGAGTCCCCTCTCGAGCTTGTACCCAGGGAGCTATGGAAGCATCCCGA
GGTCGTGTCATCCTCTAGGAAGTATGGAGTTGAACCTAGCGAAATGCTTCTCGACAAGAGACTCCACTACCATGCTATGG
CGGTGCTTCCCCAGAAGTGGAAGAGGGGCCGCCCAGACATAGTGTATATCACCCTCATGCTGCTTGTGGACTCGCTACTC
AACCTTGAAGGCCGCCTAGAGCTATACATACACGTCTACGACGGCCGTGTCTTCGCAGTACACCCAGAGCTGCGGCCCCC
AAGACACTTCGAAGGCTTTAAGAGGATTATGTCCCAGCTCCTCCGCTACAACCGTGTACCGCCAGGCTCAGACAAGCCAC
TCTTATGGCTCGAGGCTGGTAGTCTAAGAGAGTTCGTGGAGAAGCATGGCCGGATAATACTGTTATGGGAGCGGGGTACT
CCAGCAACGCCGGCCCAGGTAGTGTCTGATGCTCTGGAGTCCGGGCTCCCCATCGGCATAGGCATGTTCCCCAGGGGCGA
CTTCAAGAGGAGCACACTGAGGAAGACGGTACGAGCCTATAGCCTCGCTTTTGGCCGGCCGCTCAAATCGTGGACCGTCG
CCCACCTGGTGCTCTGTGCTGCTGAGAAGCTGCTAGGACTCATACACTCCTAG

Upstream 100 bases:

>100_bases
GGGGGCTAGCTGAGAAGGTGGGTAATCGTTACCGGGCGACACGGTGGGGGATAGCTAACGGCTAGCCTGGAGCGTCTATA
GCTATGAGGGTTGGTGATGT

Downstream 100 bases:

>100_bases
CCCCCTGGCGGGCAAAAGCTGCTACGTTTCTGCTGCATGTAGCTAGGACTTGAGGAAAAGACGGCTAGGCTTGAGGAGCA
CATAGTAGGGCTAGAGGAGC

Product: ribosome biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MASQRLKLVLLESPLELVPRELWKHPEVVSSSRKYGVEPSEMLLDKRLHYHAMAVLPQKWKRGRPDIVYITLMLLVDSLL
NLEGRLELYIHVYDGRVFAVHPELRPPRHFEGFKRIMSQLLRYNRVPPGSDKPLLWLEAGSLREFVEKHGRIILLWERGT
PATPAQVVSDALESGLPIGIGMFPRGDFKRSTLRKTVRAYSLAFGRPLKSWTVAHLVLCAAEKLLGLIHS

Sequences:

>Translated_230_residues
MASQRLKLVLLESPLELVPRELWKHPEVVSSSRKYGVEPSEMLLDKRLHYHAMAVLPQKWKRGRPDIVYITLMLLVDSLL
NLEGRLELYIHVYDGRVFAVHPELRPPRHFEGFKRIMSQLLRYNRVPPGSDKPLLWLEAGSLREFVEKHGRIILLWERGT
PATPAQVVSDALESGLPIGIGMFPRGDFKRSTLRKTVRAYSLAFGRPLKSWTVAHLVLCAAEKLLGLIHS
>Mature_229_residues
ASQRLKLVLLESPLELVPRELWKHPEVVSSSRKYGVEPSEMLLDKRLHYHAMAVLPQKWKRGRPDIVYITLMLLVDSLLN
LEGRLELYIHVYDGRVFAVHPELRPPRHFEGFKRIMSQLLRYNRVPPGSDKPLLWLEAGSLREFVEKHGRIILLWERGTP
ATPAQVVSDALESGLPIGIGMFPRGDFKRSTLRKTVRAYSLAFGRPLKSWTVAHLVLCAAEKLLGLIHS

Specific function: Involved in ribosomal biogenesis. It seems to play a role a methylation reaction in pre-rRNA processing [H]

COG id: COG1756

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NEP1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005304 [H]

Pfam domain/function: PF03587 EMG1 [H]

EC number: NA

Molecular weight: Translated: 26338; Mature: 26207

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASQRLKLVLLESPLELVPRELWKHPEVVSSSRKYGVEPSEMLLDKRLHYHAMAVLPQKW
CCCCCEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KRGRPDIVYITLMLLVDSLLNLEGRLELYIHVYDGRVFAVHPELRPPRHFEGFKRIMSQL
HCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHHHH
LRYNRVPPGSDKPLLWLEAGSLREFVEKHGRIILLWERGTPATPAQVVSDALESGLPIGI
HHHCCCCCCCCCCEEEEECCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEE
GMFPRGDFKRSTLRKTVRAYSLAFGRPLKSWTVAHLVLCAAEKLLGLIHS
ECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASQRLKLVLLESPLELVPRELWKHPEVVSSSRKYGVEPSEMLLDKRLHYHAMAVLPQKW
CCCCEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KRGRPDIVYITLMLLVDSLLNLEGRLELYIHVYDGRVFAVHPELRPPRHFEGFKRIMSQL
HCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHHHH
LRYNRVPPGSDKPLLWLEAGSLREFVEKHGRIILLWERGTPATPAQVVSDALESGLPIGI
HHHCCCCCCCCCCEEEEECCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEE
GMFPRGDFKRSTLRKTVRAYSLAFGRPLKSWTVAHLVLCAAEKLLGLIHS
ECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]