Click here to switch to the map view.

The map label for this gene is lacF [H]

Identifier: 124027207

GI number: 124027207

Start: 300682

End: 301593

Strand: Reverse

Name: lacF [H]

Synonym: Hbut_0310

Alternate gene names: 124027207

Gene position: 301593-300682 (Counterclockwise)

Preceding gene: 124027208

Following gene: 124027206

Centisome position: 18.09

GC content: 50.33

Gene sequence:

>912_bases
TTGCAGCGGTCCCACTCGGTTTTTTACATGAGGTACCGGCTCCTCGCGGAGAAGCTGGACCGCATCCTACCCTACCTACT
CATAGCACCCACTGTAGTCTACATGGGGTTCTTTGTTGGCTACCCCCTAGTGCAAGGTGTTAAGCTAGCATTCTTTGACG
AGCAAGGCAGGTTTACCACCGAGAACGTTGATTATCTCCTCAACAGCCCGCTTTCGAAGTTTCGCGACGCGCTATTCTAC
ACGCTCCTGATAACTGGCATAGTTATACCGGTCGAGTTTGTCCTCGCGCTGCTATTAGCATTCTTCTTCAACAGCTTCCG
GTTTCGTGGCAAGAACGCAGCGATATATGTTACCATTCTTCCGCTCACAATTAGCGATGTAGCTGCAGGTCTCATCTGGT
ACTCGATGCTCACTGGCAATGGTTTCGCGAACAAGCTCCTGCTAAACCTTGGCGTTATAAGCGAGCCGATACAGTTCTTT
GGTTGGCAAAACCGCGACATGGAGTTGTTAGCGATAATTATAACCGAGGTTTGGCGCTCAACCGCAATAGTCTTCGTGAT
ACTCCTAGCAGGACTGCAGATGATAAGCCATGAGTACCTCGAGGCAGCCGAGGTTTTCGGGGCTAATGCGCTGCAGAGGC
TACGCTACATAGTTCTCCCAATGCTGATGCCGAGCATACAAGCAGCACTCATCATTAGGACTTTGTTTGCACTCCAAGTG
TTTGGCAGCGTGTGGGTATTGGCAGGCAGAGATATACCAGTCCTTGCAGGCGAAGCTTTCTACGAACATACACAAATGCA
TCACACTGGTGTGGCAGCACTCTATGCATTAATAATAGCGGCTATCTCCCTCAGCCTTGGCGCCCTCTACATCAGATTCT
TCAAGGCAAGGTATCTTGAGGCTGGGAGGTGA

Upstream 100 bases:

>100_bases
AGCTTCTCAAACTCTTCGAGGAGACCGGCGCGCCGCTGCCACCACCGGATAGCGGCTAAGAAGGGGGAGCCCAGTAGTAT
CCTCTGGGGCTGGGAGGGTC

Downstream 100 bases:

>100_bases
CACCGGGGTGGAGGAGGCTAGCCCAGTCCGCTATGCGCTTCACGGCATACTTGTGGCGGCAGCTGCAGCCCTCGCGGTTG
CATGGGTGCTAGTACCTATA

Product: ABC-type sugar transport system, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MQRSHSVFYMRYRLLAEKLDRILPYLLIAPTVVYMGFFVGYPLVQGVKLAFFDEQGRFTTENVDYLLNSPLSKFRDALFY
TLLITGIVIPVEFVLALLLAFFFNSFRFRGKNAAIYVTILPLTISDVAAGLIWYSMLTGNGFANKLLLNLGVISEPIQFF
GWQNRDMELLAIIITEVWRSTAIVFVILLAGLQMISHEYLEAAEVFGANALQRLRYIVLPMLMPSIQAALIIRTLFALQV
FGSVWVLAGRDIPVLAGEAFYEHTQMHHTGVAALYALIIAAISLSLGALYIRFFKARYLEAGR

Sequences:

>Translated_303_residues
MQRSHSVFYMRYRLLAEKLDRILPYLLIAPTVVYMGFFVGYPLVQGVKLAFFDEQGRFTTENVDYLLNSPLSKFRDALFY
TLLITGIVIPVEFVLALLLAFFFNSFRFRGKNAAIYVTILPLTISDVAAGLIWYSMLTGNGFANKLLLNLGVISEPIQFF
GWQNRDMELLAIIITEVWRSTAIVFVILLAGLQMISHEYLEAAEVFGANALQRLRYIVLPMLMPSIQAALIIRTLFALQV
FGSVWVLAGRDIPVLAGEAFYEHTQMHHTGVAALYALIIAAISLSLGALYIRFFKARYLEAGR
>Mature_303_residues
MQRSHSVFYMRYRLLAEKLDRILPYLLIAPTVVYMGFFVGYPLVQGVKLAFFDEQGRFTTENVDYLLNSPLSKFRDALFY
TLLITGIVIPVEFVLALLLAFFFNSFRFRGKNAAIYVTILPLTISDVAAGLIWYSMLTGNGFANKLLLNLGVISEPIQFF
GWQNRDMELLAIIITEVWRSTAIVFVILLAGLQMISHEYLEAAEVFGANALQRLRYIVLPMLMPSIQAALIIRTLFALQV
FGSVWVLAGRDIPVLAGEAFYEHTQMHHTGVAALYALIIAAISLSLGALYIRFFKARYLEAGR

Specific function: Part of the binding-protein-dependent transport system for lactose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=222, Percent_Identity=28.8288288288288, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34230; Mature: 34230

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRSHSVFYMRYRLLAEKLDRILPYLLIAPTVVYMGFFVGYPLVQGVKLAFFDEQGRFTT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEC
ENVDYLLNSPLSKFRDALFYTLLITGIVIPVEFVLALLLAFFFNSFRFRGKNAAIYVTIL
CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
PLTISDVAAGLIWYSMLTGNGFANKLLLNLGVISEPIQFFGWQNRDMELLAIIITEVWRS
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TAIVFVILLAGLQMISHEYLEAAEVFGANALQRLRYIVLPMLMPSIQAALIIRTLFALQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGSVWVLAGRDIPVLAGEAFYEHTQMHHTGVAALYALIIAAISLSLGALYIRFFKARYLE
HHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AGR
CCC
>Mature Secondary Structure
MQRSHSVFYMRYRLLAEKLDRILPYLLIAPTVVYMGFFVGYPLVQGVKLAFFDEQGRFTT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEC
ENVDYLLNSPLSKFRDALFYTLLITGIVIPVEFVLALLLAFFFNSFRFRGKNAAIYVTIL
CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
PLTISDVAAGLIWYSMLTGNGFANKLLLNLGVISEPIQFFGWQNRDMELLAIIITEVWRS
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TAIVFVILLAGLQMISHEYLEAAEVFGANALQRLRYIVLPMLMPSIQAALIIRTLFALQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGSVWVLAGRDIPVLAGEAFYEHTQMHHTGVAALYALIIAAISLSLGALYIRFFKARYLE
HHHHHHEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1630315 [H]