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The map label for this gene is ybaO [C]

Identifier: 124027000

GI number: 124027000

Start: 90858

End: 91334

Strand: Reverse

Name: ybaO [C]

Synonym: Hbut_0100

Alternate gene names: 124027000

Gene position: 91334-90858 (Counterclockwise)

Preceding gene: 124027007

Following gene: 124026999

Centisome position: 5.48

GC content: 50.94

Gene sequence:

>477_bases
TTGTCTGCGCGGAGCCATGCTAGCATAGATGATGTTGACTATAAGCTTGTAAAGCTCCTGGCTATGAATGCGCGGCAGAG
TATACGCGAGCTCGCAAGGGAATTAAAACTTGCTGCATCAACTGTTCACACGCGGCTAAGTAAGCTTGTTAAAGCAGGGG
TTATAAGGAGGTTTACTGTCCTACCGGACTACGATGTGTTGGGCTATACTGTCACTGTTCTCATACTAATGCAAGTTGAA
GGGGGACGCATAGTAGAGGTTGGAGAATACCTCGCCAAGTCTCCCAACGTTATCGCAGTGTATGATATCACCGGCGACTA
CGATCTCGCAGTCGTAGCGAAGTTTAGGAGCGTAAGTGAGCTAGACAAGTTCATCAAGGCCGTGAACAAGCTGCCAGCCG
TCAAGCGAACCGTTACAAGCCTCGCCCTTCGCGCAATAAAGGAGGACCCCGCCTCACCCCTAACAGCGGAGGCCTAG

Upstream 100 bases:

>100_bases
CCCACGCCCCGCAACTGGCAGAATTGAAGTATTAATAGGTGGTAGGGATTCACCTTTCTAGGGCACCACCCCTTACAGCT
GCAGCCTGGGGCTGAACAGA

Downstream 100 bases:

>100_bases
CAACACCATTAGATCATGGGTGCTCCATGCTGCAAACACCATGGGTGGTACTTGAAGGGTGGCAGCAGGGCCGTCTAAAG
GGTATTGGTATCCTATATGA

Product: HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSARSHASIDDVDYKLVKLLAMNARQSIRELARELKLAASTVHTRLSKLVKAGVIRRFTVLPDYDVLGYTVTVLILMQVE
GGRIVEVGEYLAKSPNVIAVYDITGDYDLAVVAKFRSVSELDKFIKAVNKLPAVKRTVTSLALRAIKEDPASPLTAEA

Sequences:

>Translated_158_residues
MSARSHASIDDVDYKLVKLLAMNARQSIRELARELKLAASTVHTRLSKLVKAGVIRRFTVLPDYDVLGYTVTVLILMQVE
GGRIVEVGEYLAKSPNVIAVYDITGDYDLAVVAKFRSVSELDKFIKAVNKLPAVKRTVTSLALRAIKEDPASPLTAEA
>Mature_157_residues
SARSHASIDDVDYKLVKLLAMNARQSIRELARELKLAASTVHTRLSKLVKAGVIRRFTVLPDYDVLGYTVTVLILMQVEG
GRIVEVGEYLAKSPNVIAVYDITGDYDLAVVAKFRSVSELDKFIKAVNKLPAVKRTVTSLALRAIKEDPASPLTAEA

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17343; Mature: 17211

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARSHASIDDVDYKLVKLLAMNARQSIRELARELKLAASTVHTRLSKLVKAGVIRRFTV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPDYDVLGYTVTVLILMQVEGGRIVEVGEYLAKSPNVIAVYDITGDYDLAVVAKFRSVSE
CCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
LDKFIKAVNKLPAVKRTVTSLALRAIKEDPASPLTAEA
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SARSHASIDDVDYKLVKLLAMNARQSIRELARELKLAASTVHTRLSKLVKAGVIRRFTV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPDYDVLGYTVTVLILMQVEGGRIVEVGEYLAKSPNVIAVYDITGDYDLAVVAKFRSVSE
CCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
LDKFIKAVNKLPAVKRTVTSLALRAIKEDPASPLTAEA
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA