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The map label for this gene is rpl13e [H]

Identifier: 124026999

GI number: 124026999

Start: 89762

End: 90028

Strand: Reverse

Name: rpl13e [H]

Synonym: Hbut_0099

Alternate gene names: 124026999

Gene position: 90028-89762 (Counterclockwise)

Preceding gene: 124027000

Following gene: 124026998

Centisome position: 5.4

GC content: 56.93

Gene sequence:

>267_bases
TTGGCGCAGGAGAGGAGCGTAGAGCCTCCAAGGGCTATAGTGAAGAAGCCACGTCTACTCAAGTATGGTGGTGCGGAGCC
GGGTCTGCGGGAGGGTAGAGGATTCAGCATACCGGAGCTTGAGGCTGTGGGGCTGACAGTTGAACAGGCGAGAAGGCTCG
GCCTCTACGTTGACACGAGGAGGAAGACTAAGTGGGACTGGAATGTAGAGGCCCTACGTAAGTTCCTCGAAGAGCTAGGC
ATAAAGCCGCGGAGTTCCAGTAGCTAG

Upstream 100 bases:

>100_bases
GCTGGGGCTTCATATCATCAAGTTGTGGCGGCTTCTTTCTGTGTGCTCGCCAGGTTTAAAGACCTAGGCGTGGGGGGCTG
CAGTGGAGGGGTGTATGGTA

Downstream 100 bases:

>100_bases
CATTTTACTTCCACGAAACTCTACCAGGTCTCCTGCACGGCTCAGAGCTAGCCCGGCCCCACAAGCGGGTGTTTCGATCA
TAGTATCTACTGTAGGCCTT

Product: 50S ribosomal protein L13e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MAQERSVEPPRAIVKKPRLLKYGGAEPGLREGRGFSIPELEAVGLTVEQARRLGLYVDTRRKTKWDWNVEALRKFLEELG
IKPRSSSS

Sequences:

>Translated_88_residues
MAQERSVEPPRAIVKKPRLLKYGGAEPGLREGRGFSIPELEAVGLTVEQARRLGLYVDTRRKTKWDWNVEALRKFLEELG
IKPRSSSS
>Mature_87_residues
AQERSVEPPRAIVKKPRLLKYGGAEPGLREGRGFSIPELEAVGLTVEQARRLGLYVDTRRKTKWDWNVEALRKFLEELGI
KPRSSSS

Specific function: Unknown

COG id: COG4352

COG function: function code J; Ribosomal protein L13E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L13e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001380
- InterPro:   IPR023004
- InterPro:   IPR018256 [H]

Pfam domain/function: PF01294 Ribosomal_L13e [H]

EC number: NA

Molecular weight: Translated: 10007; Mature: 9875

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQERSVEPPRAIVKKPRLLKYGGAEPGLREGRGFSIPELEAVGLTVEQARRLGLYVDTR
CCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHCCCEEECC
RKTKWDWNVEALRKFLEELGIKPRSSSS
CCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AQERSVEPPRAIVKKPRLLKYGGAEPGLREGRGFSIPELEAVGLTVEQARRLGLYVDTR
CCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHCCCEEECC
RKTKWDWNVEALRKFLEELGIKPRSSSS
CCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]