Click here to switch to the map view.

The map label for this gene is yqxC [H]

Identifier: 123966876

GI number: 123966876

Start: 1434005

End: 1434817

Strand: Reverse

Name: yqxC [H]

Synonym: P9515_16431

Alternate gene names: 123966876

Gene position: 1434817-1434005 (Counterclockwise)

Preceding gene: 123966880

Following gene: 123966873

Centisome position: 84.19

GC content: 32.47

Gene sequence:

>813_bases
ATGATTAAAAAAAGTAGATTAGATCTTTATCTTCTTTCCCAAGGTTTATGTGAAACTCGTCAGAAAGCTCAGGGTCTAAT
TCTTGCTGGAAAGGTTAAAGATATCAATGGTAAGATTTTCGATAAACCAGGTCAACAAGTAATAACAGGAACTGAATTTA
TTATTGAATCTGAAGCTCAATTTGTATCAAGAGGTGGTGAGAAATTATTGGAGGCTTTTAAAAAACTCAATATCAATGTT
AAAGGTAGAGTTTGTATAGATGCAGGAATTTCTACTGGTGGATTTACTGACTGCTTGTTGCAACAAGGTGCGAAAATGGT
CTACGGGATAGATGTAGGTTATGGTCAAACGGCTTGGGAAATAAGGAAAAACCCAAAAGTTATTCTTTTTGAAAGATCAA
ATATAAGAAATTTAAAGCCTTTAGATATATATTCTGAAGAAAGTTTATTGCCAAATTTTGTTGTAGCAGATTTGTCTTTT
ATATCACTAAATTTAGTTTTCGAACCTATTAATAATTTATTATTTGGAGATTTTATAGAGGGTATCTTCCTTATTAAACC
ACAATTTGAGGTAGGAAAAGATCGAGTAAGCAAAGGGGGTGTTGTAAGAAAGGCTGAATATCATATTGAGGCTATAGAGT
CGGTTCTTAATACTGCAGAAAAATTACAATGGAATATTAAGGGTCTAGTTGCCTCTCCGTTAGTTGGCCCTGCAGGAAAT
CATGAATATCTTGCTTGGATGTCTAAGACAGGAATATCTAATCCAATAATAAATTTTAAATATATTGAGAATTTGGTAAG
AGAGACTCTTTAA

Upstream 100 bases:

>100_bases
TAGGTATTGTTTGTTTAAAAAAATTTAAAAAAGCATTATGTTTCAAAAATATTATCTGAAAATAGCCAATAGTTATTTAA
TAAAATTATTTTTACCATAA

Downstream 100 bases:

>100_bases
TTAAAGAGCTTCTTTATCGGTATCTCCAGTTCTAATTCTTACAACAGAATCAATAGGTGATATGAATATTTTCCCATCAC
CTATTTCGCCGGTTTTTGCA

Product: rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MIKKSRLDLYLLSQGLCETRQKAQGLILAGKVKDINGKIFDKPGQQVITGTEFIIESEAQFVSRGGEKLLEAFKKLNINV
KGRVCIDAGISTGGFTDCLLQQGAKMVYGIDVGYGQTAWEIRKNPKVILFERSNIRNLKPLDIYSEESLLPNFVVADLSF
ISLNLVFEPINNLLFGDFIEGIFLIKPQFEVGKDRVSKGGVVRKAEYHIEAIESVLNTAEKLQWNIKGLVASPLVGPAGN
HEYLAWMSKTGISNPIINFKYIENLVRETL

Sequences:

>Translated_270_residues
MIKKSRLDLYLLSQGLCETRQKAQGLILAGKVKDINGKIFDKPGQQVITGTEFIIESEAQFVSRGGEKLLEAFKKLNINV
KGRVCIDAGISTGGFTDCLLQQGAKMVYGIDVGYGQTAWEIRKNPKVILFERSNIRNLKPLDIYSEESLLPNFVVADLSF
ISLNLVFEPINNLLFGDFIEGIFLIKPQFEVGKDRVSKGGVVRKAEYHIEAIESVLNTAEKLQWNIKGLVASPLVGPAGN
HEYLAWMSKTGISNPIINFKYIENLVRETL
>Mature_270_residues
MIKKSRLDLYLLSQGLCETRQKAQGLILAGKVKDINGKIFDKPGQQVITGTEFIIESEAQFVSRGGEKLLEAFKKLNINV
KGRVCIDAGISTGGFTDCLLQQGAKMVYGIDVGYGQTAWEIRKNPKVILFERSNIRNLKPLDIYSEESLLPNFVVADLSF
ISLNLVFEPINNLLFGDFIEGIFLIKPQFEVGKDRVSKGGVVRKAEYHIEAIESVLNTAEKLQWNIKGLVASPLVGPAGN
HEYLAWMSKTGISNPIINFKYIENLVRETL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30080; Mature: 30080

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKSRLDLYLLSQGLCETRQKAQGLILAGKVKDINGKIFDKPGQQVITGTEFIIESEAQ
CCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCEEECCCCCEEECCHHEEEECHHH
FVSRGGEKLLEAFKKLNINVKGRVCIDAGISTGGFTDCLLQQGAKMVYGIDVGYGQTAWE
HHHCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCEEE
IRKNPKVILFERSNIRNLKPLDIYSEESLLPNFVVADLSFISLNLVFEPINNLLFGDFIE
ECCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEHHHHHHHHHHHHHHHC
GIFLIKPQFEVGKDRVSKGGVVRKAEYHIEAIESVLNTAEKLQWNIKGLVASPLVGPAGN
CEEEECCCHHHCHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHEEHHCEEEECCCCCCCCC
HEYLAWMSKTGISNPIINFKYIENLVRETL
CCEEEEEHHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MIKKSRLDLYLLSQGLCETRQKAQGLILAGKVKDINGKIFDKPGQQVITGTEFIIESEAQ
CCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCEEECCCCCEEECCHHEEEECHHH
FVSRGGEKLLEAFKKLNINVKGRVCIDAGISTGGFTDCLLQQGAKMVYGIDVGYGQTAWE
HHHCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCEEE
IRKNPKVILFERSNIRNLKPLDIYSEESLLPNFVVADLSFISLNLVFEPINNLLFGDFIE
ECCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEHHHHHHHHHHHHHHHC
GIFLIKPQFEVGKDRVSKGGVVRKAEYHIEAIESVLNTAEKLQWNIKGLVASPLVGPAGN
CEEEECCCHHHCHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHEEHHCEEEECCCCCCCCC
HEYLAWMSKTGISNPIINFKYIENLVRETL
CCEEEEEHHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]