| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is 123966706
Identifier: 123966706
GI number: 123966706
Start: 1310757
End: 1311866
Strand: Direct
Name: 123966706
Synonym: P9515_14731
Alternate gene names: NA
Gene position: 1310757-1311866 (Clockwise)
Preceding gene: 123966704
Following gene: 123966707
Centisome position: 76.91
GC content: 35.14
Gene sequence:
>1110_bases ATGACAGATATTTTAGTACTAATTTTATTTGTATTGTCTGGAGCAGCATCTGGATGGCTTGGGGTTGATCTTTTACCAGT AGACATACTTAAACAAGTCTCAAATATTGAAGGTTTTAGGGTTGTACTAGCAATTATAGGATTTTTTGTTGGATTAGCAG CAGGCTTCGTATTCCTGCAGCTTAGAAAGACATTTCTTGATCAAATACGCACAATGCCCACTGATCTACTCATCAGTAGA TCAGTAGGGTTAATTTTAGGATTACTTGTTGCTAATTTACTACTAGCGCCAATATTGTTAATTCCATTTCCAAGAGAAGT ATTTTTTGCAAAACCATTAGCAGCTATTCTTAGTAATTTTTTCTTTGGGGCACTTGGTTATAAATTAGCTGATACACATG GAAGAACACTTTTAAGATTGTTTAACCCAAATAATACTGATGCATATCTAGTTAATGAAGGTATACTTCCAGCCGCAAGC CCAAAGATTCTTGATACAAGTGTAATTATAGATGGAAGAATTAATGGTTTATTGAGCTGCGGCTTACTTGAGGGACAATT AATTGTCGCTCAAAGTGTAATTGACGAGCTACAAACTTTGGCTGACTCTAGTAGTAATGAGAAAAGAGCTAAAGGGAGAA GAGGACTTAAATTATTGAAAGAACTAAGAGAACTTTACGGAAGAAGACTTGTTATAAATCCAACAAAATATGAGGGGAAC GGAGTAGATGAAAAACTTCTAAGAATATCTGAAGATATGGCAGGTACGTTAATTACTGCAGATTATAATCTCTCTCAGAT TGCGGAAGTAAAGGAATTAAAAGTTATGAATTTGAGCGATTTAGTGATTGCTTTGAGGCCAGAAGTACAACCCGGGGAAT CACTTAATATTAAAATTGTTAGAGAGGGAAAAGAAAAAATGCAAGGGATTGGATATTTAGATGACGGCACAATGGTAGTT ATTGATGATGCAAAGAAATTTGTTGGAGATAGATTGGACATAGTTATAACTGGTGCATTGCAAACACCAACAGGAAGAAT GGTATTTGGAAAACTGATAAATGATCCTGAGTCAAACAAATCTTTTAAATCAACAGCGACACAGGGCTAA
Upstream 100 bases:
>100_bases CATAATATAAATAAATTTTTAGGCTAAAAAAAATCTAGTTAGGGGTTTAAAAAATAAAATATTTATTTACTCAATTAATA AACCCTAGTAGATTGTATAT
Downstream 100 bases:
>100_bases ATCTAGCTAGAATCATTCCAGTATTTATTTTGTGGAACATATGACTGTATCTGCTCCTTATTATGGCGAAAATACCGCTA TGAGGACTCCGCCCCCAGAT
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MTDILVLILFVLSGAASGWLGVDLLPVDILKQVSNIEGFRVVLAIIGFFVGLAAGFVFLQLRKTFLDQIRTMPTDLLISR SVGLILGLLVANLLLAPILLIPFPREVFFAKPLAAILSNFFFGALGYKLADTHGRTLLRLFNPNNTDAYLVNEGILPAAS PKILDTSVIIDGRINGLLSCGLLEGQLIVAQSVIDELQTLADSSSNEKRAKGRRGLKLLKELRELYGRRLVINPTKYEGN GVDEKLLRISEDMAGTLITADYNLSQIAEVKELKVMNLSDLVIALRPEVQPGESLNIKIVREGKEKMQGIGYLDDGTMVV IDDAKKFVGDRLDIVITGALQTPTGRMVFGKLINDPESNKSFKSTATQG
Sequences:
>Translated_369_residues MTDILVLILFVLSGAASGWLGVDLLPVDILKQVSNIEGFRVVLAIIGFFVGLAAGFVFLQLRKTFLDQIRTMPTDLLISR SVGLILGLLVANLLLAPILLIPFPREVFFAKPLAAILSNFFFGALGYKLADTHGRTLLRLFNPNNTDAYLVNEGILPAAS PKILDTSVIIDGRINGLLSCGLLEGQLIVAQSVIDELQTLADSSSNEKRAKGRRGLKLLKELRELYGRRLVINPTKYEGN GVDEKLLRISEDMAGTLITADYNLSQIAEVKELKVMNLSDLVIALRPEVQPGESLNIKIVREGKEKMQGIGYLDDGTMVV IDDAKKFVGDRLDIVITGALQTPTGRMVFGKLINDPESNKSFKSTATQG >Mature_368_residues TDILVLILFVLSGAASGWLGVDLLPVDILKQVSNIEGFRVVLAIIGFFVGLAAGFVFLQLRKTFLDQIRTMPTDLLISRS VGLILGLLVANLLLAPILLIPFPREVFFAKPLAAILSNFFFGALGYKLADTHGRTLLRLFNPNNTDAYLVNEGILPAASP KILDTSVIIDGRINGLLSCGLLEGQLIVAQSVIDELQTLADSSSNEKRAKGRRGLKLLKELRELYGRRLVINPTKYEGNG VDEKLLRISEDMAGTLITADYNLSQIAEVKELKVMNLSDLVIALRPEVQPGESLNIKIVREGKEKMQGIGYLDDGTMVVI DDAKKFVGDRLDIVITGALQTPTGRMVFGKLINDPESNKSFKSTATQG
Specific function: Unknown
COG id: COG4956
COG function: function code R; Integral membrane protein (PIN domain superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TRAM domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002716 - InterPro: IPR006596 - InterPro: IPR002792 [H]
Pfam domain/function: PF01850 PIN [H]
EC number: NA
Molecular weight: Translated: 40249; Mature: 40118
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: PS50926 TRAM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDILVLILFVLSGAASGWLGVDLLPVDILKQVSNIEGFRVVLAIIGFFVGLAAGFVFLQ CHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LRKTFLDQIRTMPTDLLISRSVGLILGLLVANLLLAPILLIPFPREVFFAKPLAAILSNF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHH FFGALGYKLADTHGRTLLRLFNPNNTDAYLVNEGILPAASPKILDTSVIIDGRINGLLSC HHHHHCCHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCEEC GLLEGQLIVAQSVIDELQTLADSSSNEKRAKGRRGLKLLKELRELYGRRLVINPTKYEGN CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC GVDEKLLRISEDMAGTLITADYNLSQIAEVKELKVMNLSDLVIALRPEVQPGESLNIKIV CHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCEEEEE REGKEKMQGIGYLDDGTMVVIDDAKKFVGDRLDIVITGALQTPTGRMVFGKLINDPESNK ECCHHHHCCCCEECCCCEEEEECHHHHCCCCEEEEEEECEECCCCCHHHHHHHCCCCCCC SFKSTATQG CHHHCCCCC >Mature Secondary Structure TDILVLILFVLSGAASGWLGVDLLPVDILKQVSNIEGFRVVLAIIGFFVGLAAGFVFLQ HHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LRKTFLDQIRTMPTDLLISRSVGLILGLLVANLLLAPILLIPFPREVFFAKPLAAILSNF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHH FFGALGYKLADTHGRTLLRLFNPNNTDAYLVNEGILPAASPKILDTSVIIDGRINGLLSC HHHHHCCHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCEEC GLLEGQLIVAQSVIDELQTLADSSSNEKRAKGRRGLKLLKELRELYGRRLVINPTKYEGN CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC GVDEKLLRISEDMAGTLITADYNLSQIAEVKELKVMNLSDLVIALRPEVQPGESLNIKIV CHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCCEEEEE REGKEKMQGIGYLDDGTMVVIDDAKKFVGDRLDIVITGALQTPTGRMVFGKLINDPESNK ECCHHHHCCCCEECCCCEEEEECHHHHCCCCEEEEEEECEECCCCCHHHHHHHCCCCCCC SFKSTATQG CHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]